Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_A06
(1190 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein. 159 5e-39
AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast m... 159 5e-39
AC084158-32|AAM15619.1| 116|Caenorhabditis elegans Mad (yeast m... 82 9e-16
U64840-1|AAB04959.2| 484|Caenorhabditis elegans Glutamate-gated... 31 1.2
AJ243914-1|CAB51708.1| 484|Caenorhabditis elegans Glutamate-gat... 31 1.2
Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical pr... 30 3.7
U14524-1|AAA50785.1| 461|Caenorhabditis elegans avermectin-sens... 30 3.7
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 29 6.5
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 29 6.5
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 29 6.5
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 29 6.5
AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical... 29 8.5
>AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein.
Length = 203
Score = 159 bits (385), Expect = 5e-39
Identities = 80/198 (40%), Positives = 122/198 (61%)
Frame = +1
Query: 88 KNCLPLRGSAQILCASXXFSXNSVLFQRGXSPPETFKAXNQYGITLLLSXXPQXKRFLTN 267
+N + L+GSAQ++ F NS+L+QR P ++FK +YG+TL ++ + + F+
Sbjct: 7 QNAISLKGSAQLVKEFFHFGLNSILYQRALYPSDSFKREKKYGLTLWVAHEKKLQAFMDP 66
Query: 268 LLTQXEAWILDKXVKKLSLIILNVANKEVLECWDFNIQYEXGXTALSKEKNEMVGSKDLK 447
LL Q E W+ + +K+L ++I V KEV+E W F+I E L++E K+ K
Sbjct: 67 LLQQVEYWLAKRQLKRLVMVISEVKTKEVVERWQFDIHTEN----LAEEGENAHRVKEEK 122
Query: 448 KIQQEIRDVMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQ 627
KI+QEI DV+ Q+ A++S+LPLL+ SFDVL++ D PE W E+ I N++ VQ
Sbjct: 123 KIRQEISDVIRQITASVSFLPLLEEPVSFDVLIYTGKDTQAPEDWTESGACLIQNSETVQ 182
Query: 628 LKSFSTSLHKMETVVSYK 681
L+SFSTS+H + T V YK
Sbjct: 183 LRSFSTSVHSVNTNVQYK 200
>AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform a
protein.
Length = 203
Score = 159 bits (385), Expect = 5e-39
Identities = 80/198 (40%), Positives = 122/198 (61%)
Frame = +1
Query: 88 KNCLPLRGSAQILCASXXFSXNSVLFQRGXSPPETFKAXNQYGITLLLSXXPQXKRFLTN 267
+N + L+GSAQ++ F NS+L+QR P ++FK +YG+TL ++ + + F+
Sbjct: 7 QNAISLKGSAQLVKEFFHFGLNSILYQRALYPSDSFKREKKYGLTLWVAHEKKLQAFMDP 66
Query: 268 LLTQXEAWILDKXVKKLSLIILNVANKEVLECWDFNIQYEXGXTALSKEKNEMVGSKDLK 447
LL Q E W+ + +K+L ++I V KEV+E W F+I E L++E K+ K
Sbjct: 67 LLQQVEYWLAKRQLKRLVMVISEVKTKEVVERWQFDIHTEN----LAEEGENAHRVKEEK 122
Query: 448 KIQQEIRDVMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQ 627
KI+QEI DV+ Q+ A++S+LPLL+ SFDVL++ D PE W E+ I N++ VQ
Sbjct: 123 KIRQEISDVIRQITASVSFLPLLEEPVSFDVLIYTGKDTQAPEDWTESGACLIQNSETVQ 182
Query: 628 LKSFSTSLHKMETVVSYK 681
L+SFSTS+H + T V YK
Sbjct: 183 LRSFSTSVHSVNTNVQYK 200
>AC084158-32|AAM15619.1| 116|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform b
protein.
Length = 116
Score = 81.8 bits (193), Expect = 9e-16
Identities = 37/100 (37%), Positives = 61/100 (61%)
Frame = +1
Query: 88 KNCLPLRGSAQILCASXXFSXNSVLFQRGXSPPETFKAXNQYGITLLLSXXPQXKRFLTN 267
+N + L+GSAQ++ F NS+L+QR P ++FK +YG+TL ++ + + F+
Sbjct: 7 QNAISLKGSAQLVKEFFHFGLNSILYQRALYPSDSFKREKKYGLTLWVAHEKKLQAFMDP 66
Query: 268 LLTQXEAWILDKXVKKLSLIILNVANKEVLECWDFNIQYE 387
LL Q E W+ + +K+L ++I V KEV+E W F+I E
Sbjct: 67 LLQQVEYWLAKRQLKRLVMVISEVKTKEVVERWQFDIHTE 106
>U64840-1|AAB04959.2| 484|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 3 protein.
Length = 484
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSFSTSL 651
++L + Y P+ C D+ +A T+ DI +W + PV + + L SF L
Sbjct: 157 MVLSCPMHLQYYPMDVQTCLIDLASYAYTENDIEYRWKKTDPVQLKKGLHSSLPSF--EL 214
Query: 652 HKMETVV 672
+ ++T +
Sbjct: 215 NNVDTTL 221
>AJ243914-1|CAB51708.1| 484|Caenorhabditis elegans Glutamate-gated
chloride channelsubunit protein.
Length = 484
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSFSTSL 651
++L + Y P+ C D+ +A T+ DI +W + PV + + L SF L
Sbjct: 157 MVLSCPMHLQYYPMDVQTCLIDLASYAYTENDIEYRWKKTDPVQLKKGLHSSLPSF--EL 214
Query: 652 HKMETVV 672
+ ++T +
Sbjct: 215 NNVDTTL 221
>Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical
protein F11A5.10 protein.
Length = 461
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +CS D+ +A T DI W E P+ + + L SF
Sbjct: 187 LVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSF 242
>U14524-1|AAA50785.1| 461|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl alpha protein.
Length = 461
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +CS D+ +A T DI W E P+ + + L SF
Sbjct: 187 LVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSF 242
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +C D+ +A T DI W E PV + + L SF
Sbjct: 379 LVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSSSLPSF 434
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +C D+ +A T DI W E PV + + L SF
Sbjct: 200 LVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSSSLPSF 255
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +C D+ +A T DI W E PV + + L SF
Sbjct: 379 LVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSSSLPSF 434
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +C D+ +A T DI W E PV + + L SF
Sbjct: 379 LVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSSSLPSF 434
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 472 VMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
++L + Y P+ +C D+ +A T DI W E PV + + L SF
Sbjct: 200 LVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSSSLPSF 255
>AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical
protein Y71H2AM.24 protein.
Length = 322
Score = 28.7 bits (61), Expect = 8.5
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 400 ALSKEKNEMVGSKDLK--KIQQEIRDVMLQVAATISYLPLLDCRCSFDVLVHAKTDCDIP 573
++S K E + K++ ++Q + ++ + I L+ RC +L+H DCD
Sbjct: 178 SISGTKGEDISLKNIDSCRLQFDFEPSIVHIR-NIKNSTLIFLRCDRSLLIH---DCDNV 233
Query: 574 EKWAEAQPVAIANAQNVQL 630
+ AQ V I +QN+ L
Sbjct: 234 HIYVAAQQVRIHTSQNLHL 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,614,052
Number of Sequences: 27780
Number of extensions: 353626
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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