Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A06
         (1190 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   5.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   5.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   7.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   7.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   9.2  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 295 LDKXVKKLSLIILNVANKEVL 357
           LDK V  L L++ N+  KEVL
Sbjct: 650 LDKPVDPLLLVLSNIHVKEVL 670


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 295 LDKXVKKLSLIILNVANKEVL 357
           LDK V  L L++ N+  KEVL
Sbjct: 650 LDKPVDPLLLVLSNIHVKEVL 670


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 593 CASAHFSGISQSVLA*TKTSNEHLQSNSGKYDIVAATC 480
           C    +S +++S+L      N HL+S+S  Y    A C
Sbjct: 19  CEKCSYSCVNKSML------NSHLKSHSNVYQYRCANC 50


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 924 HNYSNGEFKMKLCHNNY 974
           +NY+N  +  KL + NY
Sbjct: 104 YNYNNNNYNKKLYYKNY 120


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 508 PLLDCRCSFDVLVHAKTDCDIPEKWAEAQPVAIANAQNVQLKSF 639
           P+   RC         T  D+  KW  A+ VAI  A++++L  F
Sbjct: 138 PMDTQRCPLQFGSFGYTKRDVIYKWNSARQVAI--AEDMKLSQF 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,729
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40608837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)