Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A04
         (1196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    27   5.2  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   6.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   9.0  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    26   9.0  

>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -3

Query: 654 SLSQESKNSHSSDISKAHILCQSFPYKAFNFSSELSALLEGSDMFASWGFSESNL 490
           S+S+  + SH+ D  K+H + +S       +      L+   +  + WG   SNL
Sbjct: 30  SISKLKELSHADDSRKSHRIIRSGKSSGEAYKQAGKGLMNLGNHLSDWGAKSSNL 84


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 467 LEREKLKTKLDSENPQDANMSEPSNKAESS-EEKLKA 574
           LE+EK+K K D EN + A     S   ES  E +LKA
Sbjct: 674 LEKEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKA 710


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 422  IQFLKDNAKFKEDARLEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKALYGK--DWQ 595
            I++ K  A   EDAR++REK K +  +E  ++A + E   +    +E+ + +  +  +W+
Sbjct: 861  IEYEKSVAAKLEDARIQREKEKARRLAE--EEALLKEKQERERQLQEERQKMQEEVLEWR 918

Query: 596  R 598
            +
Sbjct: 919  K 919


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 467 LEREKLKTKLDSENPQDANMSEPSNKAESSEEKLKA 574
           +E+++++ KLDS +P+    ++PSN       KL +
Sbjct: 308 VEQKQMQQKLDSMSPEWYQAADPSNGVVDGTPKLNS 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,618
Number of Sequences: 5004
Number of extensions: 61529
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)