Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_A01
(1129 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 32 0.17
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.51
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 30 0.68
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 29 1.6
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 29 1.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 2.1
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 28 2.7
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 27 3.6
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 3.6
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 6.3
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.4
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 498 PEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKTGPVRKESAESKNAKEADQG 677
P G V E+ +G+LTV+A K K E++V G + +E E + KEA++
Sbjct: 495 PRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIE-RMVKEAEE- 552
Query: 678 FCED 689
F E+
Sbjct: 553 FAEE 556
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.3 bits (65), Expect = 0.51
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = -1
Query: 595 SPLSSITFLGAVTVKIPSVDSSETTLAVSAPSGKEYLRTNCLDTYPCSSCFSSCLASTTT 416
S S+ T + +V P+V SSET +VS S + ++ +D ++ S+ ST+
Sbjct: 193 SSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSE 252
Query: 415 *PSAVFTDISSGEKCWTSKLIWNLSFSVLIVEPRSRAKDAV 293
+ TDI + +S S S +VE S D+V
Sbjct: 253 ATVSFSTDIPATPSTLSSPA---SSSSSYLVETSSTLTDSV 290
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.9 bits (64), Expect = 0.68
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 315 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYVSRQFVRKY- 491
+G T + E D+F N V +F P+ + + K +E+ DEH Q V +
Sbjct: 1048 IGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELL 1107
Query: 492 -SLPEGADTAN 521
LPE N
Sbjct: 1108 GYLPEPPSKPN 1118
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3
Query: 441 EKQDEHGYVSRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKT 620
E Q Y+ RQF Y+ ++++++ EL + I T T ++ + +P+T+
Sbjct: 123 EVQSTIEYIMRQF---YAYVSSQESSHIIYELLKNAISTTTLVLSDLNHFRSKKIPLTEF 179
Query: 621 GPVRKESAESKNAKEA 668
ESA SK +A
Sbjct: 180 ALRYPESAVSKLLDQA 195
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 173 FXRDILHLPLLY*STATQDSTTSNGERNEI 84
F RDILH ++Y + + T S+ RNEI
Sbjct: 33 FRRDILHRAVIYEADNDRQGTASSKRRNEI 62
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 701 FLTSVFTEPLISFFCIFRLCRFLAN 627
F+ S F PL+ FC+F C F+ +
Sbjct: 353 FVLSFFVYPLVQEFCLFLACSFVVS 377
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 504 GADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITK 617
G D + + S+++ D L + RK+ D++ E++ ++K
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSK 489
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 468 SRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRK 575
S + +R Y +P AD N++ E+S G + + K
Sbjct: 113 SAKSIRSYIIPTNADPQNIIYEISQSGYYCIWSHSK 148
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 613 VIGTTLSPLSSITFLGAVTVKIPSVD 536
++GT L PL+ +T L + VK+P D
Sbjct: 561 ILGTILIPLNLVTGLWGMNVKVPGQD 586
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 315 GRGPKTPCAAKVGSSRE-LSTASSCLLRSRPELAASRSPDPQVCCLAAFXQGHSSSAT 145
G TP A++ +S + LS+ +S S LAAS +P +A+ S+SAT
Sbjct: 148 GDSATTPAASEAQASSDILSSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASAT 205
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 171 KKQRDNKLVDQDFGMPLTPDD 233
KK +D ++VD FG+ L+ DD
Sbjct: 343 KKGKDGQIVDAGFGLVLSKDD 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,344
Number of Sequences: 5004
Number of extensions: 62672
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 599646782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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