Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P24
         (1164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78...    46   6e-05
10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437...    44   2e-04

>03_01_0099 +
           778521-778736,779521-779775,779831-779924,780064-780116,
           780301-780339,781091-781159,781275-781445,781533-781598,
           782533-782601,782993-783060,783308-783430,784095-784228,
           784412-784506,784600-784644,784755-784814,785548-785599,
           785674-785714,785857-785921,786704-786755,787021-787092
          Length = 612

 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 29/102 (28%), Positives = 43/102 (42%)
 Frame = +2

Query: 263 VVYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELX 442
           VVY  ++ P+N  VA+K   +DR       I++   T       N+      FV    L 
Sbjct: 45  VVYRAVFLPSNRTVAVKCLDLDRVNSNLDDIRKEAQTMSLIDHPNVIRAYCSFVVDHNLW 104

Query: 443 VVSPXMSFGSCXDXLXRYFXEGISXLXXAIVLXDVXXXLXYL 568
           V+ P MS GSC   +   + +G      A +L +    L YL
Sbjct: 105 VIMPFMSEGSCLHLMKVAYPDGFEEPVIASILKETLKALEYL 146


>10_08_0643 +
           19541991-19542188,19543261-19543515,19543598-19543722,
           19543815-19543859,19544618-19544699,19545099-19545167,
           19545276-19545446,19545530-19545595,19546236-19546273,
           19547478-19547759,19548286-19548419,19548887-19548981,
           19549083-19549127,19549250-19549309,19549483-19549584,
           19549852-19549903,19549982-19550034,19550138-19550202,
           19550579-19550630,19550780-19550857
          Length = 688

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 1/141 (0%)
 Frame = +2

Query: 215 DYQLXSIITECSDGGX-VVYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFF 391
           DYQL   + E   G   VVY  L+ P N  VA+K   +D+       IQ+          
Sbjct: 25  DYQL---MEEVGYGAHAVVYRALFVPRNDVVAVKCLDLDQLNNNIDEIQREAQIMSLIEH 81

Query: 392 ANIXPYLXXFVXGRELXVVSPXMSFGSCXDXLXRYFXEGISXLXXAIVLXDVXXXLXYLX 571
            N+      FV    L VV P M+ GSC   +   + +G        +L +    L YL 
Sbjct: 82  PNVIRAYCSFVVEHSLWVVMPFMTEGSCLHLMKIAYPDGFEEPVIGSILKETLKALEYLH 141

Query: 572 XXLXIXXSVXXXXVXIXXXGV 634
               I   V    + +   G+
Sbjct: 142 RQGQIHRDVKAGNILVDNAGI 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,200,539
Number of Sequences: 37544
Number of extensions: 113607
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)