Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P24
         (1164 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    34   0.17 
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    34   0.17 
U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center...    31   2.1  
U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center...    31   2.1  
U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center...    31   2.1  
U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center...    29   6.3  

>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +2

Query: 266 VYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELXV 445
           V++    P N KVAIK   +++ +     +   +    +    N+  Y   F+   EL V
Sbjct: 122 VFTAYCLPRNEKVAIKCINLEKCQTSVDELSHEIQAMSQCNHPNVVSYYTSFIAQEELWV 181

Query: 446 VSPXMSFGSCXDXLXR 493
           V   ++ GS  D L R
Sbjct: 182 VMRLLNCGSMLDILKR 197


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +2

Query: 266 VYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELXV 445
           V++    P N KVAIK   +++ +     +   +    +    N+  Y   F+   EL V
Sbjct: 122 VFTAYCLPRNEKVAIKCINLEKCQTSVDELSHEIQAMSQCNHPNVVSYYTSFIAQEELWV 181

Query: 446 VSPXMSFGSCXDXLXR 493
           V   ++ GS  D L R
Sbjct: 182 VMRLLNCGSMLDILKR 197


>U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform d protein.
          Length = 638

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 24/122 (19%), Positives = 46/122 (37%)
 Frame = +2

Query: 266 VYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELXV 445
           VY  +       VAIK   +++ +++   IQQ +    +     +  Y   F+ G +L +
Sbjct: 33  VYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWI 92

Query: 446 VSPXMSFGSCXDXLXRYFXEGISXLXXAIVLXDVXXXLXYLXXXLXIXXSVXXXXVXIXX 625
           +   +  GS  D         +     A++L ++   L YL     I   +    V +  
Sbjct: 93  IMEYLGGGSALDLTK---SGKLDESHIAVILREILKGLEYLHSERKIHRDIKAANVLVSE 149

Query: 626 XG 631
            G
Sbjct: 150 HG 151


>U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform b protein.
          Length = 651

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 24/122 (19%), Positives = 46/122 (37%)
 Frame = +2

Query: 266 VYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELXV 445
           VY  +       VAIK   +++ +++   IQQ +    +     +  Y   F+ G +L +
Sbjct: 46  VYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWI 105

Query: 446 VSPXMSFGSCXDXLXRYFXEGISXLXXAIVLXDVXXXLXYLXXXLXIXXSVXXXXVXIXX 625
           +   +  GS  D         +     A++L ++   L YL     I   +    V +  
Sbjct: 106 IMEYLGGGSALDLTK---SGKLDESHIAVILREILKGLEYLHSERKIHRDIKAANVLVSE 162

Query: 626 XG 631
            G
Sbjct: 163 HG 164


>U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform a protein.
          Length = 653

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 24/122 (19%), Positives = 46/122 (37%)
 Frame = +2

Query: 266 VYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELXV 445
           VY  +       VAIK   +++ +++   IQQ +    +     +  Y   F+ G +L +
Sbjct: 48  VYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWI 107

Query: 446 VSPXMSFGSCXDXLXRYFXEGISXLXXAIVLXDVXXXLXYLXXXLXIXXSVXXXXVXIXX 625
           +   +  GS  D         +     A++L ++   L YL     I   +    V +  
Sbjct: 108 IMEYLGGGSALDLTK---SGKLDESHIAVILREILKGLEYLHSERKIHRDIKAANVLVSE 164

Query: 626 XG 631
            G
Sbjct: 165 HG 166


>U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform c protein.
          Length = 650

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 21/101 (20%), Positives = 41/101 (40%)
 Frame = +2

Query: 266 VYSXLYKPNNTKVAIKRYFVDRGKEKAXLIQQXVLTRKEXFFANIXPYLXXFVXGRELXV 445
           VY  +       VAIK   +++ +++   IQQ +    +     +  Y   F+ G +L +
Sbjct: 46  VYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWI 105

Query: 446 VSPXMSFGSCXDXLXRYFXEGISXLXXAIVLXDVXXXLXYL 568
           +   +  GS  D         +     A++L ++   L YL
Sbjct: 106 IMEYLGGGSALDLTK---SGKLDESHIAVILREILKGLEYL 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,177
Number of Sequences: 27780
Number of extensions: 119422
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)