Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P22
         (1292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.26 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -1

Query: 560  PGXXPXSXEXPPPPPXGGXXPXXXXEKXXPPPXPGGGNGXXPHXPTAXXPP 408
            P   P S   P P P  G  P        P P P  G    P  PTA  PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP-VPTAKAPP 1238



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = -3

Query: 1026 PPXPXXXXXXPPPPRXXXXXXXXXXPXXXXPPPPXXXRGGXXXPXPXXXXXXPHPXGGXX 847
            PP P      PP P+          P    PP P    G    P P      P P  G  
Sbjct: 1150 PPVPAPSGA-PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 846  P 844
            P
Sbjct: 1209 P 1209



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = -3

Query: 1026 PPXPXXXXXXPPPPRXXXXXXXXXXPXXXXPPPPXXXRGGXXXPXPXXXXXXPHPXGGXX 847
            PP P      PP P+          P    PP P    G    P P      P P  G  
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEA-PPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227

Query: 846  P 844
            P
Sbjct: 1228 P 1228



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = -1

Query: 560  PGXXPXSXEXPPPPPXGGXXPXXXXEKXXPPPXPGGGNGXXPHXPTAXXPP 408
            P   P S   P P P  G  P     +  P P P  G    P   TA   P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
 Frame = -1

Query: 527  PPPPXGGXXPXXXXEKXXPPPXPGGGNGXXP-HXPTAXXPPRGXFNKAEKTPPTS 366
            PP P     P         PP P   +G  P   P A  PP    ++A   P  S
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
 Frame = -1

Query: 530  PPPPPXGGXX--PXXXXEKXXPPPXPGGGNGXXPHXPTAXXPPRGXFNKAEKTPPTSPKT 357
            PPPP  G     P     +  P   P   N   P  P +        + +   PP++P T
Sbjct: 926  PPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYT 985

Query: 356  XNQXXMXXXXPXFXXRAXMGAXXPXPPRK 270
                      P    +   G+    PP++
Sbjct: 986  PIAVASSTVNPAHTYKPHGGSQIVPPPKQ 1014


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 548 PXSXEXPPPPPXGGXXPXXXXEKXXPPPXPG 456
           P     PPPPP G   P     +  PPP PG
Sbjct: 5   PPGNPPPPPPPPGFEPP----SQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = +2

Query: 890  GXGXXXPPRXXXGGGGXXXXGXXXXXXXXXXRGGGGXXXXXXGXGGXGXXPXXXXXXXXX 1069
            G G   PP    G GG    G            GGG      G GG G  P         
Sbjct: 194  GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 1070 XGG 1078
             GG
Sbjct: 254  FGG 256



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 20/69 (28%), Positives = 20/69 (28%)
 Frame = +2

Query: 836  PXPGXXPPXGCGXXXXXXGXGXXXPPRXXXGGGGXXXXGXXXXXXXXXXRGGGGXXXXXX 1015
            P PG   P G G      G G         GGG     G            GGG      
Sbjct: 200  PPPG---PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256

Query: 1016 GXGGXGXXP 1042
            G GG G  P
Sbjct: 257  GPGGFGGGP 265


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/57 (28%), Positives = 16/57 (28%)
 Frame = -3

Query: 1077 PPXXXXXXXXXXGXXPXPPXPXXXXXXPPPPRXXXXXXXXXXPXXXXPPPPXXXRGG 907
            PP             P PP        PPPP           P    PPPP    GG
Sbjct: 735  PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = -1

Query: 560 PGXXPXSXEXPPPPPXGGXXPXXXXEKXXPPP-XPGGGNGXXPHXPTAXXPPR 405
           P   P     PPPPP  G           PPP    GG+      P A   P+
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = -1

Query: 560 PGXXPXSXEXPPPPPXGGXXPXXXXEKXXPPPXPGGGNGXXPHXPTAXXP 411
           P   P     PPP P  G  P        PPP P G  G  P  P    P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPP--------PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = -1

Query: 530 PPPPPXGGXXPXXXXEKXXPPPXPGGGNGXXPHXPTAXXPPRGXFNKAEKTPPTSP 363
           PPPPP     P        P P P    G  P  P    PP G        PP  P
Sbjct: 732 PPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPPPP----PPPGVAGAGPPPPPPPP 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
 Frame = -1

Query: 548 PXSXEXPPPPPXGGXXPXXXXEKXXPPPXPGGGNGXXPHXPTAXXPPRGXFNKAEKTPPT 369
           P     PPPPP          +   P      G    P  P    P +     A   PP 
Sbjct: 184 PSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPA-PPPPP 242

Query: 368 SPKTXNQXXMXXXXPXFXXRA-XMGAXXPXPPRKXTP 261
            P    Q       P        +G+    PP   TP
Sbjct: 243 PPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP 279


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 937 PPPPXXXPGGXXPXPPXXXXXXPTP 863
           PPPP     G  P PP      P P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,405
Number of Sequences: 5004
Number of extensions: 34891
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)