Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P21
         (1176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    43   9e-05
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    37   0.005

>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +3

Query: 585 EIFFFKEGAVVFWN---CXELEXXXXREFVKPYELESYPRXVIEKXREIMTYIYQPNSXX 755
           EIF F  G VVFWN     E +      F     L   P    E   E + + Y PN+  
Sbjct: 240 EIFVFSYGVVVFWNFSLSQEKDILADLTFGGDNSLMVKPLAEEECEIEDLHFHYAPNTKR 299

Query: 756 CHLQESCFIMVPERDNSLXRXAFXHAMAQSARLGAWEAR 872
             +     I +P  DN + + A  HA+AQS +L  +E R
Sbjct: 300 PRIYND-MIHIPSADNKM-KLAMSHALAQSVKLSRFELR 336


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +3

Query: 582 REIFFFKEGAVVFWN-CXELEXXXXREFVKPYELESYP--RXVIEKXREIMTYIYQPNSX 752
           RE+F F  G VV W    + E    RE  + +E+E        +E+    +T +YQP   
Sbjct: 156 REVFCFTYGVVVLWGYTIDEEHRFLRELGR-FEIEKLKIEDMEVEEFNYYITTLYQPRIF 214

Query: 753 XCHLQESCFIMVPERDNSLXRXAFXHAMAQSARLGAWE 866
                 + FI + +  N + R +  HA+AQS ++  +E
Sbjct: 215 ------NDFIALRDASNYMIRLSISHAIAQSVKISLFE 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,582
Number of Sequences: 5004
Number of extensions: 42319
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)