Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P20
         (1161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   2.8  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   5.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   5.0  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   6.6  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   8.7  

>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 110 PLFKLFHLKFVWNKID-NESAF 172
           P+F   HL F+WN  D N +AF
Sbjct: 303 PVFSFEHLSFIWNYFDANSNAF 324


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 481 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTA 600
           PST T   ASK T  T+  AQ +S+  ++S      K TA
Sbjct: 36  PSTQTGGYASKDTTSTYEGAQPLSSQSSRSSNYTNVKITA 75


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 526 SNSYVLTHSWRSESKDSTQSTAAQSNCGSPSEMRQLHAWEHGFLIRFCGKGDR 368
           SNS  + +SW +E ++ T+ +    +   P E   +   +HG ++  CG   +
Sbjct: 117 SNSSCIVYSWNAEQRNLTEISRFTCSEIIPLEF-AIVKLDHGIILTVCGSSKK 168


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 447 QFDCAAVDCVESFDSDLQECVKTYELDSCCSTANVCGKDAIAALKTCQVD 596
           Q     V+CV+  D DL   +K   L       ++   +A+ AL   Q D
Sbjct: 102 QIIARVVNCVKEIDDDLYNTLKEKLLSRVLDRESIVRLEAVVALSRLQED 151


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 619 SPSLYVLPSTWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTAAQSNCGS 440
           +P+  + P T  +  +A A  P+ +    HES S     S  S S  S  STAA  +   
Sbjct: 4   NPNAGIQPLTNSISQSASAH-PELYHTTSHESVSTYQLQSQLSHSATSNLSTAANFHTRP 62

Query: 439 P 437
           P
Sbjct: 63  P 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,134,758
Number of Sequences: 5004
Number of extensions: 86652
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)