Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_P20
(1161 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0861 + 6710815-6713142 36 0.061
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 33 0.43
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810... 29 5.3
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 29 7.0
07_03_0610 + 19932220-19933176,19933270-19933782 29 7.0
09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420 29 9.3
06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179 29 9.3
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 29 9.3
03_02_0627 + 9951391-9951523,9951615-9951684,9951829-9951856,995... 29 9.3
02_04_0552 - 23804154-23805326 29 9.3
>01_01_0861 + 6710815-6713142
Length = 775
Score = 35.9 bits (79), Expect = 0.061
Identities = 31/128 (24%), Positives = 51/128 (39%)
Frame = -3
Query: 958 TKGGTSXIHVVHCSPTVISSPTDSVWLPKTHWALTLRRFSPLITFVVVDGHSNPIGQLRP 779
+KGG + SP S T +W K+ +L ++P+ F + + S+ +
Sbjct: 53 SKGGAFRLGFNCLSPPCYSDSTFGIWYIKSSTCRSLLVWAPVANFCIFNPWSSSF--ILS 110
Query: 778 FPANIGAQLSNILSW*CISKPQSMSLQ*AELSAESLQSDVQMQVFLVFWGSKISPSLYVL 599
+ + LSW S+S L +L Q+ +VFW S +P +L
Sbjct: 111 EDGKLNLIIDGSLSWSSNGVETSVSAVAILLDNGNLVIRDQVNSTMVFWQSFDNPIGILL 170
Query: 598 PSTWQVFN 575
P W FN
Sbjct: 171 PGGWLGFN 178
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 33.1 bits (72), Expect = 0.43
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +1
Query: 481 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRIGRGRFSSPRTQGRPASV 660
PS +R+ S T W + +Q A R + +PAKWT+ +I P+ G A+V
Sbjct: 281 PSHGLARTRSNNTAWQTLGSQ---ADRNKENNMRPAKWTSHKI-------PQKVGSRAAV 330
Query: 661 HPTGVT 678
PT V+
Sbjct: 331 QPTRVS 336
>01_05_0246 +
19880364-19880565,19880721-19880801,19880891-19881054,
19881784-19881835,19882110-19882462
Length = 283
Score = 29.5 bits (63), Expect = 5.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +3
Query: 585 CQVDGKTYREGEIFEPQNTRKT----CICTSDWSDSADNSAYCRDI 710
C + GK +G N R+T C CT D SA+ Y +DI
Sbjct: 79 CCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDI 124
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 29.1 bits (62), Expect = 7.0
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = -3
Query: 730 CISKPQSMSLQ*AELSAESLQSDVQMQVFLVFWGSKISPSLYVLPSTWQVFNAAIASLPQ 551
C+S + + ++ ESL V L S I ++ P VF +SLP
Sbjct: 121 CLSIEKVFVIGGGQVLRESLNGPSCEAVHLTDIQSSIECDTFIPPIDLSVFQPWYSSLPV 180
Query: 550 TFAVLQHESNSYVLTHSWRSESKDSTQSTAAQSNCGS 440
+ ++H +YV +E+ DS +A S
Sbjct: 181 VESNIRHSFVTYVRVRKTMAETHDSNGKESANDGIKS 217
>07_03_0610 + 19932220-19933176,19933270-19933782
Length = 489
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -3
Query: 607 YVLPSTWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTA 461
YV+P WQVF +AS+ A + H+ + ++ + R +S+ S+ STA
Sbjct: 374 YVIPKGWQVF--WVASVTHMDAAIFHDPDKFLPS---RFDSQSSSPSTA 417
>09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420
Length = 217
Score = 28.7 bits (61), Expect = 9.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 594 DGKTYREGEIFEPQNTRKTCI 656
DG+ + G +EP RKTCI
Sbjct: 101 DGEVFSVGSTYEPSKVRKTCI 121
>06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179
Length = 180
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 463 QSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQ 573
+STA + STPT RS++ T +T ++Q+ + SQ
Sbjct: 141 RSTASTTSTPTGRSSTGATGYTSRSSQRRNVGWISSQ 177
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/104 (19%), Positives = 42/104 (40%)
Frame = +3
Query: 306 KCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESF 485
+C HP PT+ R + T + + ++N C + +CR P + + +
Sbjct: 123 ECKYAHPHPTVAVDRDSKVTACA----DSLRNNCFRGRTCRYYHPPPHIQESLLRSIGVE 178
Query: 486 DSDLQECVKTYELDSCCSTANVCGKDAIAALKTCQVDGKTYREG 617
D ++ + + C +AN C + L+ C + + + G
Sbjct: 179 DPKVKMVCRDFTRGRCSRSANECRFLHHSPLEDCAIVCQDFLRG 222
>03_02_0627 +
9951391-9951523,9951615-9951684,9951829-9951856,
9952208-9952254,9952366-9952456,9952738-9952915,
9953626-9953713,9953788-9953869,9954195-9954270,
9954429-9954496,9954623-9954692,9955469-9955553,
9955671-9955764,9956289-9956372
Length = 397
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 258 TPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRSPLP 383
TP P + D F+C D T+ + SY +PLP
Sbjct: 26 TPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLP 67
>02_04_0552 - 23804154-23805326
Length = 390
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 509 DALLEVGVEGLHAVDCGAIELRLTIGDAAAARLGARVLDQILR 381
D+++E V L A D A + L GD AA++ VLD LR
Sbjct: 2 DSIMEPYVADLLADDITASMVELLSGDGGAAQMDVGVLDAYLR 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,453,380
Number of Sequences: 37544
Number of extensions: 626589
Number of successful extensions: 1812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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