Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P19
         (1184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.43 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.56 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 121 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDE 267
           +D  T +E+ GRG+ + +G          RGR     + KD   ++D E
Sbjct: 69  NDKKTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYE 117


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 290 PRLATGACSSSEDLAESFVLVAAGGRPRFLSSFD 189
           P++ T   S    +A +F+L    G PR +SSFD
Sbjct: 315 PQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFD 348


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 824 IYKKDLIIIS*SCTLTR 774
           ++ +DLII+   CT+TR
Sbjct: 220 MFNRDLIIVQTGCTITR 236


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 824 IYKKDLIIIS*SCTLTR 774
           ++ +DLII+   CT+TR
Sbjct: 220 MFNRDLIIVQTGCTITR 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,620
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40367835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)