Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_P17
(1253 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 31 1.9
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 1.9
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 30 4.4
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 30 4.4
02_01_0475 + 3422629-3422695,3422960-3423216 30 4.4
02_04_0103 - 19768288-19768737 29 5.8
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -2
Query: 1234 FFFFFFFXXXXFFFXXXXFFXXXXXKXXXFFFFF 1133
FFFFFFF FFF FF FFFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFF---------FFFFF 86
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -2
Query: 1231 FFFFFFXXXXFFFXXXXFFXXXXXKXXXFFFFFF 1130
FFFFFF FFF FF FFFFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFF---------FFFFFF 86
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -2
Query: 322 FFFXFXXFFXXXFFFPFPPXFXXFFXFF 239
FFF F FF FFF F F FF FF
Sbjct: 62 FFFFFFFFFFFFFFFFF---FFFFFFFF 86
>02_04_0516 + 23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 1130 KKKKKKXXXFXXXXXKKXXXXEKKXXXXKKKKKKK 1234
KKKKKK KK +KK KKKKKKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKK 103
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 1130 KKKKKKXXXFXXXXXKKXXXXEKKXXXXKKKKKKK 1234
KKKKKK KK +KK KKKKKKK
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 1130 KKKKKKXXXFXXXXXKKXXXXEKKXXXXKKKKKKK 1234
KKKKKK KK +KK KKKKKKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 1130 KKKKKKXXXFXXXXXKKXXXXEKKXXXXKKKKKKK 1234
KKKKKK KK +KK KKKKKKK
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 223 KXXXXKKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
K KKK K KK ++KK KK K KKKK
Sbjct: 73 KKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 223 KXXXXKKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
K KKK K KK ++KK KK K KKKK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +2
Query: 1130 KKKKKKXXXFXXXXXKKXXXXEKKXXXXKKKKKKK 1234
KKKKKK KK KK KKKKKKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKK 102
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 223 KXXXXKKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
K KKK K KK ++KK KK K KKKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKK 101
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 223 KXXXXKKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
K KKK K KK + KK KK K KKKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 29.5 bits (63), Expect = 5.8
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 223 KXXXXKKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
K KKK K KK +KK KK K KKKK
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = +3
Query: 1128 KKKKKKXXXFFXXXXXKXXXXXKKKXXXXKKKKKKK 1235
KKKKKK K KKK KKKKKKK
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 223 KXXXXKKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
K KKK K KK ++KK KK K KKK+
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 238 KKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
KKK K KK ++KK KK K KKKK
Sbjct: 28 KKKKKKKKKKKKKKKKKKKKKKKKKKKKK 56
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 228 GXVKKKXKXXKKXGGKGKKNXXKKXXXXKKKK 323
G KKK K KK K KK KK KKKK
Sbjct: 25 GLPKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 56
>05_03_0496 + 14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 29.9 bits (64), Expect = 4.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 1234 FFFFFFFXXXXFFFXXXXFF 1175
FFFFFFF FFF FF
Sbjct: 87 FFFFFFFFFFFFFFFFFFFF 106
Score = 29.9 bits (64), Expect = 4.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 1234 FFFFFFFXXXXFFFXXXXFF 1175
FFFFFFF FFF FF
Sbjct: 88 FFFFFFFFFFFFFFFFFFFF 107
Score = 29.9 bits (64), Expect = 4.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 1234 FFFFFFFXXXXFFFXXXXFF 1175
FFFFFFF FFF FF
Sbjct: 89 FFFFFFFFFFFFFFFFFFFF 108
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 238 KKKXKXXKKXGGREKKXXXKKXXKXKKKK 324
KKK K KK ++KK KK K KKKK
Sbjct: 43 KKKKKKKKKKKKKKKKKKKKKKKKKKKKK 71
>02_04_0103 - 19768288-19768737
Length = 149
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 238 KKKXKXXKKXGGREKKXXXKKXXKXKKKKXXXXG 339
K+K K KK ++KK KK K KKKK G
Sbjct: 107 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,044
Number of Sequences: 37544
Number of extensions: 177674
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -