Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P16
         (1195 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5E7S2 Cluster: Putative uncharacterized protein; n=1; ...    40   0.13 
UniRef50_UPI0000D8BA54 Cluster: X-linked retinitis pigmentosa GT...    34   6.3  

>UniRef50_A5E7S2 Cluster: Putative uncharacterized protein; n=1;
            Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
            uncharacterized protein - Lodderomyces elongisporus
            (Yeast) (Saccharomyces elongisporus)
          Length = 905

 Score = 39.9 bits (89), Expect = 0.13
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 266  GKRKGKYEHRRTEQEYSSXEDAGIDMTNDNYSETSGQSDLKSIHDEGEN-DSQXKLEEKV 442
            G+R+GK E  + E++ +   +   +  N+N S+  G+ D K++ DE EN D   ++ EKV
Sbjct: 836  GERRGKQEENKWEEDTTKEREKKKNNNNNNSSKNDGKKDDKNV-DEDENIDEDLEVTEKV 894

Query: 443  XEII 454
             E +
Sbjct: 895  EESV 898


>UniRef50_UPI0000D8BA54 Cluster: X-linked retinitis pigmentosa
           GTPase regulator.; n=1; Danio rerio|Rep: X-linked
           retinitis pigmentosa GTPase regulator. - Danio rerio
          Length = 912

 Score = 34.3 bits (75), Expect = 6.3
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +2

Query: 263 KGKRKGKYEHRRTEQEYSSXEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQXKLEEK 439
           +G+++GK + + TE +  S E+   D T +   E  G+ D ++  +EG  + + + E+K
Sbjct: 738 EGEKEGKMKSKNTEDKSGSGEEEDDDET-EKQEERHGRKDRETEEEEGGEEEEEEAEQK 795


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,931,031
Number of Sequences: 1657284
Number of extensions: 5749212
Number of successful extensions: 16791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16742
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 119945242685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)