Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P16
         (1195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   6.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 269 KRKGKYEHRRTEQEYSSXEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQXKLEEKVXE 448
           ++ GK +   +EQE    +DA  D  +  YS    +S+ +   +  E D + K  E+  E
Sbjct: 351 QKPGKSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQE 410


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 287 EHRRTEQEYSSXEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQ 421
           E    E+E  S ED+ +   +++ SE+  +S+ +S  +E  ++S+
Sbjct: 86  ESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,810
Number of Sequences: 5004
Number of extensions: 25258
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)