Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P12
         (1184 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    46   0.003
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.003
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.008
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    40   0.17 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.38 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.67 
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   8.3  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 45.6 bits (103), Expect = 0.003
 Identities = 23/30 (76%), Positives = 23/30 (76%)
 Frame = +2

Query: 764 VVRXXXAVSXHSKAVIXLSTXSGDNAGXNM 853
           VVR   AVS HSKAVI LST SGDNAG NM
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 478 DPDMIRYIDEFGQTTTRMQ 534
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.0 bits (99), Expect = 0.008
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 711 VCVLGALPXPRSLTRXARSFGXGERYXXT 797
           +C  G +P PRSLTR ARSFG GERY  T
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 39.5 bits (88), Expect = 0.17
 Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 675 CINESANARGXAVCVLGALPXPRSLTRXARSFGXGERY-XXTQRR*XGYPXNQGITQ 842
           CI + A AR  AV VL ALP  RS TR  RS G G      +  R  G P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.38
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 673 SALMNRPTRGXRRFAYW 723
           +ALMNRPTRG RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.67
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -2

Query: 727 APNTQTAXPRALADSLMQ 674
           APNTQTA PRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 8.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 636 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 472
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,945,203
Number of Sequences: 1657284
Number of extensions: 10724960
Number of successful extensions: 24782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24775
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 118725460556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)