Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P12
         (1184 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   4.5  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    23   6.0  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    23   6.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.9  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 538 KKCFICEICDAIALFVTIISCNKQVN 615
           K C +C+  + I  F+ II C  Q N
Sbjct: 522 KLCDVCDSVNRIFGFIIIIGCLIQFN 547


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 561 NFTNKAFFSLH 529
           NF NKAFF  H
Sbjct: 20  NFNNKAFFCFH 30


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 561 NFTNKAFFSLH 529
           NF NKAFF  H
Sbjct: 20  NFNNKAFFCFH 30


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 287 LWVGPRGFCSLCSKSRTWFQSSRRAC 210
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 287 LWVGPRGFCSLCSKSRTWFQSSRRAC 210
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 287 LWVGPRGFCSLCSKSRTWFQSSRRAC 210
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 287 LWVGPRGFCSLCSKSRTWFQSSRRAC 210
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,374
Number of Sequences: 336
Number of extensions: 2850
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34640592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)