Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P10
         (1150 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   7.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 343 ANTTCYDVFIDTIFLNSTHNLTC 275
           A+T C++VF+D I     +N  C
Sbjct: 530 ASTRCWEVFMDGICNEDCNNPEC 552


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 749 LTSRSVVDAPACGLSGSVVTS-CCSLDGRSAVVTSAPCGCRMSGMAFL 609
           LT  SV    A  LSGSVVT   C L   +   +S       SG+A+L
Sbjct: 379 LTVSSVSKPEALRLSGSVVTKVTCELFQATLSSSSDTNRFGTSGLAWL 426


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 335 YVLRRFY*YNFFKQYSQSYMHNFISSFITR--QFL 237
           YVL   Y   +++Q  + + H +  SFI    QFL
Sbjct: 111 YVLTLCYAVYYWRQQYEDFWHRYTLSFIENYCQFL 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,311
Number of Sequences: 336
Number of extensions: 4872
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33403428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)