Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P10
         (1150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    32   0.13 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    31   0.40 
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    30   0.70 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    26   8.6  

>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 577 KEFLETGRTGRRNAMPDILHPQGAEVTTADLPSRLQQLVTTDPDNPQA 720
           ++F+      R+  + DILHP  A ++  DL  +L Q+  TD    QA
Sbjct: 10  RKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQA 57


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +3

Query: 591 DGTHGTEECHAGHPASTRRGGYDRRSAVQAATARHH*SRQSTGGRIDDGSGR*ESRRTDR 770
           D    +    + HP+S  R  YD  S     ++RH  SR+    R ++ S R  SR  D 
Sbjct: 150 DRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR----RYEERSSR-SSRAHDY 204

Query: 771 *KGQLQLSCRSHSRSKDRTGLAQS*SNLNQ 860
               L+   RSH R + R+   +  S L++
Sbjct: 205 DYEDLRDDDRSHERKRSRSRPRERSSKLSE 234


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 577 KEFLETGRTGRRNAMPDILHPQGAEVTTADLPSRLQQLVTTDPDNPQA 720
           ++F+      R+  + DILHP  A ++  ++  +L Q+  TD +  QA
Sbjct: 10  RKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQA 57


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 501 KKTAIGMKCAENDGNNA 551
           ++  +GM C EN+GNN+
Sbjct: 95  RRGLVGMACTENEGNNS 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,902,223
Number of Sequences: 5004
Number of extensions: 76387
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)