Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_P10
(1150 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106... 33 0.56
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 32 0.98
11_04_0081 - 13320073-13320639 32 0.98
06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460... 32 0.98
04_01_0353 - 4623910-4624812 31 2.3
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 31 2.3
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 30 4.0
10_07_0059 + 12475452-12475785,12475889-12476523 29 5.2
11_03_0053 + 9339386-9339781 29 6.9
07_03_0524 - 19037638-19038294 29 6.9
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 29 6.9
11_03_0198 - 11527711-11528163 29 9.1
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 29 9.1
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 29 9.1
>02_05_1040 -
33709588-33709880,33709960-33710200,33710498-33710672,
33710781-33710892,33711906-33712145,33712253-33712436
Length = 414
Score = 32.7 bits (71), Expect = 0.56
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 691 VTTDPDNPQAGASTTDLDVKKADEQTAKKD 780
V + PD+P+AGA L KADE+ KKD
Sbjct: 308 VLSAPDSPRAGADKPLLPFSKADEEAEKKD 337
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.9 bits (69), Expect = 0.98
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +3
Query: 588 GDGTHGTEECHAGHPASTRRGGYDRRSAVQAATARHH*SRQSTGGRIDDGSGR*ESRRTD 767
G G G + ++ P R GYDRRS ++ ++R SR + R R SR
Sbjct: 1206 GFGGKGRDRSYSRSPDRGRSRGYDRRSGSRSLSSRSR-SRSRSWSR-----SRSRSRSWS 1259
Query: 768 R*KGQLQLSCRSHSRSKDR 824
R + + + RS SRS D+
Sbjct: 1260 RSRSRSRSPSRSRSRSYDQ 1278
>11_04_0081 - 13320073-13320639
Length = 188
Score = 31.9 bits (69), Expect = 0.98
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +3
Query: 588 GDGTHGTEECHAGHPASTRRGGYDRRSAVQAATARHH*SRQSTGGRIDDGSGR 746
GDGTH E + G+ RR A A AR RQ+T GSGR
Sbjct: 120 GDGTHARREAGRDGDGAAAAMGWRRRQAAMATAAR----RQATMATARGGSGR 168
>06_01_0630 -
4598804-4599295,4599627-4599965,4600002-4600039,
4600145-4600460,4600541-4600794,4601586-4601651,
4603422-4603617
Length = 566
Score = 31.9 bits (69), Expect = 0.98
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 519 MKCAENDGNNAGQE*RRSAQGVLGDG 596
++ + DG N G+E R SAQ V+GDG
Sbjct: 495 VRSPDADGGNGGREERNSAQNVMGDG 520
>04_01_0353 - 4623910-4624812
Length = 300
Score = 30.7 bits (66), Expect = 2.3
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Frame = +3
Query: 540 GNNAGQE*RRSAQGVLGDGTHGTEECHAGHPASTRRGGYDRRSAVQ-------AATARHH 698
G+ A + S G LG G TEE G S+ RG RSA + +TAR H
Sbjct: 143 GSTARGHGKASTGGGLGRGGSATEEVGDGDVGSSTRGYGRGRSAAEEVGHGDAGSTARGH 202
Query: 699 *SRQSTGGRIDDGSGR*ESRRTDR*KGQLQLSCRSHSR-SKDRTGLAQS*SNLNQV 863
G ID GR S + G + R H R GL + S+ +V
Sbjct: 203 ----GRGRSIDGSLGRGGSATEEVKDGDAGSTARDHERGGSTGNGLGRGRSSAEEV 254
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 30.7 bits (66), Expect = 2.3
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +1
Query: 469 SLLA-TSQAICVRRLPLG*NVLRMMAIMQDRNREEVPKEFLETGRTGRRNAMPDILHPQG 645
SLLA T QA VR++ LG ++ + + + R+E KE E RRN + ++ P+G
Sbjct: 402 SLLAPTVQAEAVRKI-LGIDIEKKKEERKQKERDE--KEKQEKTEEYRRNCIQCVMGPEG 458
Query: 646 AEVTTAD---LPSRLQQLVTTDPDNPQAGASTTDLDVKKADEQTAKKDSCS 789
VT D LPS + P + A + + K + K CS
Sbjct: 459 TVVTFPDKMGLPSIFDSKPISYPPPREKCAGPSCTNPYKYRDSKTKLPLCS 509
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 662 QICRPGCNSSSPLIPTIHRRAHRRRIWTLRKQTNR 766
Q+ +P C SP+ ++ A+ R+IW + NR
Sbjct: 176 QLVQPWCGIGSPIFASVDPMANMRQIWAESSRANR 210
>10_07_0059 + 12475452-12475785,12475889-12476523
Length = 322
Score = 29.5 bits (63), Expect = 5.2
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 644 ARRLRPQICRPGCNSSSPLIPTIHRRAHRRRIWTLRKQTNRP-LKRTAAVELSVSLKVER 820
ARRLR +P S+ P HRR RR R ++ P A S S V
Sbjct: 162 ARRLRGAKAKPNFPSAPPPSAAAHRRKKRRAHAATRSPSSPPATSEVTAASASASSDVPA 221
Query: 821 PNWTS 835
P + S
Sbjct: 222 PAFAS 226
>11_03_0053 + 9339386-9339781
Length = 131
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 636 STRRGGYDRRSAVQAATARHH*SRQSTGG 722
+ R GGY R+S QAA+AR H + + TGG
Sbjct: 76 TARNGGYPRQS--QAASARVHRTSRHTGG 102
>07_03_0524 - 19037638-19038294
Length = 218
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 526 VLRMMAIMQDRNREEVPKEFLETGRTGRRNAMPDILHPQGAEVTTADL 669
+ R+ M+ R R E TGR +R++ P LHP + +AD+
Sbjct: 11 IKRLRREMESRRRRS--PELAPTGRVAKRSSTPPPLHPSPDDERSADV 56
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 631 GCPAWHSSVPCVPSPRTP 578
GCPAW S C P P P
Sbjct: 147 GCPAWSSPCHCYPPPAMP 164
>11_03_0198 - 11527711-11528163
Length = 150
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 459 GIHKLTSNESSYLRKKTAIGMKCAENDGNNAGQE*RRSAQGVLGDGTHG 605
G K S+ES+ K A EN G+N+ + GV GDG HG
Sbjct: 94 GEGKRASDESAQPSDKGATDGSAQENQGDNS-----QGVHGVQGDGAHG 137
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 577 KEFLETGRTGRRNAMPDILHPQGAEVTTADLPSRLQQLVTTDPDN 711
++F+ R+ + ++LHP A V+ ADL +L +L N
Sbjct: 15 RKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSN 59
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 577 KEFLETGRTGRRNAMPDILHPQGAEVTTADLPSRLQQLVTTDPDN 711
++F+ R+ + ++LHP A V+ ADL +L +L N
Sbjct: 15 RKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSN 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,281,929
Number of Sequences: 37544
Number of extensions: 519850
Number of successful extensions: 1464
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3491481604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -