Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P10
         (1150 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.72 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   2.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   5.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   6.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   8.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   8.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   8.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   8.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   8.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   8.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.72
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 619 WHSSVPCVPSPRTPW 575
           WH      PSP+TPW
Sbjct: 196 WHGDNMLEPSPKTPW 210


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 675 GRQICGRNLRALWMQDVRHGIPPSRASRLQELLGHFFSIPVL 550
           GR +  R ++A  +     G     A +L ELLGH F   VL
Sbjct: 461 GRAL-SRRIKATVLFATETGTSQMYAEKLSELLGHAFHSQVL 501


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRP---LKRTAAVELSVSLKVERPNWTSPKLK*SQPGIVLRSHTS 886
           R  HRR +W ++++  R    L +   +E  +    E     S + K   PG   RS+TS
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPGSRDRSNTS 94


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 580 EFLETGRTGRRNAMPDILHPQGAEVTTADLPSRLQQ--LVTTDPDNPQAGAST 732
           EF+     GR+  M ++++  G    T  LP+ L +  ++   P   + G  T
Sbjct: 349 EFVCVNYVGRKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKREGGPPT 401


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 146 KFVRIKNNYFYCDFEIDPLFNLCLK 220
           K+   K N+F   F++D L N C K
Sbjct: 374 KYDAKKRNFFITMFDLDFLTNACKK 398


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 534 NDGNNAGQE*RRSAQGVLGDGTHGTEECHAG 626
           N+ NN G     +  G   +  +G   CH G
Sbjct: 247 NNNNNNGANDNGNGNGASNNNNNGDMFCHTG 277


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 RRAHRRRIWTLRKQTNRPLKR 778
           R  HRR +W ++++  R  +R
Sbjct: 35  RLQHRREVWLIQQEREREHER 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,614
Number of Sequences: 438
Number of extensions: 5947
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38921823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)