Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_P07
(1178 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 52 1e-06
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816... 50 3e-06
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646... 42 0.001
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870... 40 0.004
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526... 33 0.58
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 31 1.3
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037... 29 7.1
02_05_0985 - 33331257-33332498 29 9.4
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 51.6 bits (118), Expect = 1e-06
Identities = 29/84 (34%), Positives = 43/84 (51%)
Frame = +3
Query: 315 SYTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGE 494
SYT E VL + LP YPS PP F ++ WMD + L K L I+ + G+
Sbjct: 161 SYTCNFEYLPPLVLTCL-LPLSYPSKEPPYFTVTVKWMDGPNVSQLCKMLDTIWAELPGQ 219
Query: 495 TVIFQWVEMIREVLQTVCKVEKKI 566
V+++WVE +R ++ + KI
Sbjct: 220 EVVYRWVESLRNSSRSYLWFDGKI 243
>04_04_0994 +
29980076-29980441,29980900-29980998,29981075-29981612,
29982211-29982494,29983014-29983034,29983238-29983452,
29983538-29983691,29984089-29984220
Length = 602
Score = 50.4 bits (115), Expect = 3e-06
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 318 YTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGET 497
Y R+E + +LL LP YPS PP F +SA WM++ ++L + L ++ + G
Sbjct: 195 YKFRVE-HLPPILLTCLLPSPYPSHQPPLFTISAEWMNKMMVSSLCQMLDTVWEEQKGVE 253
Query: 498 VIFQWVEMIR 527
V +QW + ++
Sbjct: 254 VTYQWAQWLQ 263
>02_05_0391 +
28563242-28563302,28563714-28563931,28564563-28564637,
28564730-28565264,28565343-28565523,28565586-28565724,
28565826-28566067,28566157-28566322,28566591-28566698
Length = 574
Score = 41.9 bits (94), Expect = 0.001
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 351 VLLYVTLPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDN-VGETVIFQWVEMIR 527
V+L LP YPS P F ++A W+D ++ L EI+ + G+ V+++WV+ +
Sbjct: 168 VVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQEVVYKWVDWL- 226
Query: 528 EVLQTVCKVEKKIEVTEPEVDS 593
C V P+ DS
Sbjct: 227 STSSWFCIASDDQIVFGPDADS 248
>04_04_0995 +
29985473-29985625,29986372-29986446,29986537-29987044,
29987349-29987734,29988418-29988641,29988728-29988893,
29989095-29989226
Length = 547
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 369 LPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQTVC 548
+P YPS P F LS+ W+D ++L L I+ +G V++ WV+ ++ +
Sbjct: 123 MPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQLGLEVVYGWVQWLQSSALSHL 182
Query: 549 KVEKKIEVTEPE 584
I + +P+
Sbjct: 183 GFNDGIVIQQPD 194
>02_05_0389 +
28551649-28551903,28552328-28552402,28552482-28552605,
28552692-28552978,28553147-28553482,28553813-28553869,
28554156-28554382,28554465-28554627,28554912-28554938
Length = 516
Score = 32.7 bits (71), Expect = 0.58
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 405 FELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMI 524
+ L+A W+D + L L E++ + G+ VI++WV+ +
Sbjct: 148 YHLAAKWLDEPKVSYLCAALDEVWTELPGQEVIYRWVDWL 187
>08_02_0204 - 14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/44 (27%), Positives = 29/44 (65%)
Frame = +3
Query: 225 VDNLSRQAEEIEALKSIYTEELTIDSEITRSYTIRIEENKKEVL 356
V+ L+ E ++ LK EE+ +++ SYT+R+++++++V+
Sbjct: 918 VEQLTIPKEFVQRLKGDIPEEIQLETHNRNSYTVRVDKSQEKVI 961
>03_05_0109 -
20903013-20903062,20903406-20903538,20903631-20903726,
20904011-20904168,20904278-20904392,20904486-20904539,
20904818-20904925,20905406-20905495,20905907-20906086,
20906204-20906516,20906619-20906794
Length = 490
Score = 29.1 bits (62), Expect = 7.1
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 513 VEMIREVLQTVCKVEKKIEVTEP---EVDSLDLTTIEINCPEITHGEIIADRKSIFQGHA 683
V+++ ++ + ++K+ + +P E +LD +E+N H + IAD++ Q
Sbjct: 120 VQVLSALINFLYYRDEKLALLQPIIHEFPNLDERCMELNAKIAEHQKAIADQELAAQ--- 176
Query: 684 AEVHSIDDVKAVLNKLKQ 737
EV + ++A +N LKQ
Sbjct: 177 MEVPMVQQLEAEVNSLKQ 194
>02_05_0985 - 33331257-33332498
Length = 413
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 495 TVIFQWVEMIREVLQTVCKVEKKIEVTEPEVDSLD 599
T +F+ EM++E++Q VE KIE T E++SLD
Sbjct: 293 TSLFKVFEMVQEMVQDYTGVE-KIEDTWTELESLD 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,703,694
Number of Sequences: 37544
Number of extensions: 343266
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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