Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_P03
         (1189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    30   2.8  
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    30   3.7  
U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   4.9  

>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 23/68 (33%), Positives = 27/68 (39%)
 Frame = +3

Query: 519 EKKXEKKXXKXKXRXKXKKNXNXK*XKXXKXKKXKXXXN*KXXKXXKNIKKKXXXXXKXX 698
           EKK EKK  K K + K +K    K  K  K K  K     K  K  K  KK         
Sbjct: 183 EKKVEKKEEK-KDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKKDKKDKKDKKDKK 241

Query: 699 KXKXXKKN 722
           + K  KK+
Sbjct: 242 EKKDDKKS 249



 Score = 29.5 bits (63), Expect = 4.9
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +3

Query: 510 IXXEKKXEKKXXKXKXRXKXKKNXNXK*XK--XXKXKKXKXXXN*KXXKXXKNIKKKXXX 683
           +  EKK EKK    K   K +K    K  K    K +K +   + K  +  K+ KK+   
Sbjct: 167 VKSEKKEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKK 226

Query: 684 XXKXXKXKXXKKN 722
             K  K K  KK+
Sbjct: 227 DKKDKKDKKDKKD 239



 Score = 29.5 bits (63), Expect = 4.9
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = +3

Query: 495 SENEXIXXEKKXEKKXXKXKXRXKXKKNXNXK*XKXXKXKKXKXXXN*KXXKXXKNIKKK 674
           ++ E    EKK EKK  K K   K +K    +  K  + KK K   + K  K  K+ K K
Sbjct: 179 AKKEEKKVEKKEEKK-DKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKKDKKDKKDK 237

Query: 675 XXXXXKXXKXKXXKKN 722
                K    K  KKN
Sbjct: 238 KDKKEK-KDDKKSKKN 252


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 23/75 (30%), Positives = 31/75 (41%)
 Frame = +3

Query: 498 ENEXIXXEKKXEKKXXKXKXRXKXKKNXNXK*XKXXKXKKXKXXXN*KXXKXXKNIKKKX 677
           ++E    +KK EKK  K   +   KK  + K  K  K KK K     K  +  K   KK 
Sbjct: 126 KDEEKKDDKKDEKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREKKDEEKKEDDKK- 184

Query: 678 XXXXKXXKXKXXKKN 722
               K  K +  KK+
Sbjct: 185 EDDKKDDKKEDEKKD 199


>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 20/82 (24%), Positives = 33/82 (40%)
 Frame = +3

Query: 474 KKX*YGYSENEXIXXEKKXEKKXXKXKXRXKXKKNXNXK*XKXXKXKKXKXXXN*KXXKX 653
           K+    + + +    EKK EKK  K + + + KK       K  K ++ K     +  + 
Sbjct: 125 KRIYISFKKGDEKGDEKKDEKKEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKKEE 184

Query: 654 XKNIKKKXXXXXKXXKXKXXKK 719
            K  KK+     K  + K  KK
Sbjct: 185 KKEEKKEEKKEEKNDENKEEKK 206



 Score = 28.7 bits (61), Expect = 8.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 519 EKKXEKKXXKXKXRXKXKKNXNXK*XKXXKXKKXKXXXN*KXXKXXKNIKKKXXXXXKXX 698
           EKK EKK  K + + + KK+   +  K  K ++ K     +  +  K  KK+        
Sbjct: 144 EKKEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKKEEKKEEKKEEKKEEKNDENKE 203

Query: 699 KXKXXKKN 722
           + K  KK+
Sbjct: 204 EKKEEKKD 211


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +3

Query: 519 EKKXEKKXXKXKXRXKXKKNXNXK*XKXXKXKKXKXXXN*KXXKXXKNIKKKXXXXXKXX 698
           EKK +KK  K   +   KK  + K  K  K KK K     K  +  K   KK     K  
Sbjct: 129 EKKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREKKDEDKKEDDKK-EDDKKDD 187

Query: 699 KXKXXKKN 722
           K +  KK+
Sbjct: 188 KKEDDKKD 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,976,954
Number of Sequences: 27780
Number of extensions: 19786
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3255550896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)