Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O23
         (1414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
 Frame = +2

Query: 623  PAXSPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGS 802
            P+ +PP  K     PP  A   +P     P P P     P+    P         PA+G 
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAP-----PVPKPSVAAPPV--PAPSSGIPPVPKPAAGV 1188

Query: 803  GXXXX--QIXRXPXXSXAPPXXXPPTTGXPLP 892
                   +    P  S   P   PP+T  P+P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 27/111 (24%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
 Frame = +2

Query: 599  VPRGXRXXPAXSPP---PSKXXXXXP-PXNAXMSSPEXXXXP*PSPQXTXXPLRHXG--- 757
            VP+     P+  PP   PS      P P  A          P P P     P+       
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAV 1111

Query: 758  PXCXTXTXAPPASGSGXXXXQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXP 910
            P     + APP          +   P  S APP   P     P+P     P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPV---PVPSGAPPVPKPSVAAPPVPAPSGAP 1159


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
 Frame = +3

Query: 1026 PAPXXXPXTDXXRXPGX-PXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPX 1202
            PAP         + PG     P    AP P  P    P    N P P    S  ++PP  
Sbjct: 1449 PAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSS 1508

Query: 1203 XHP 1211
              P
Sbjct: 1509 VAP 1511


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 1068 PGXPXPPXXPXAPT-PXQPXXXSPXXPXNXPXPHXAASXXRRPPP 1199
            P  P PP    A + P  P   S   P   P P  A S  R+PPP
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPP---PPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,555
Number of Sequences: 5004
Number of extensions: 17980
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 784935310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)