Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O23
(1414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 40 0.006
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 40 0.006
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 40 0.006
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.017
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.017
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.017
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 36 0.092
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 35 0.12
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 35 0.12
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 35 0.16
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.28
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.37
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 32 1.1
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 32 1.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.5
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 30 4.6
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 8.0
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 8.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 8.0
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 39.5 bits (88), Expect = 0.006
Identities = 33/116 (28%), Positives = 37/116 (31%), Gaps = 1/116 (0%)
Frame = +2
Query: 605 RGXRXXP-AXSPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTX 781
RG R P A SPPP PP S P P P T P P T +
Sbjct: 226 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP-----PPPPTGSP 280
Query: 782 APPASGSGXXXXQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXPAXXRXXTTPXXXR 949
PP +G + P PP PPT P P P + P R
Sbjct: 281 PPPPAGGSPPPPRAGSPP--PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/85 (24%), Positives = 23/85 (27%)
Frame = +2
Query: 632 SPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXX 811
SPPP PP P P P P P P PPA
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
Query: 812 XXQIXRXPXXSXAPPXXXPPTTGXP 886
+ +PP PPT P
Sbjct: 331 PPPRQKRQAPERSPPTGSPPTGSPP 355
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 1032 PXXXPXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHP 1211
P P G PP P A +P P SP P P A PP P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 39.5 bits (88), Expect = 0.006
Identities = 33/116 (28%), Positives = 37/116 (31%), Gaps = 1/116 (0%)
Frame = +2
Query: 605 RGXRXXP-AXSPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTX 781
RG R P A SPPP PP S P P P T P P T +
Sbjct: 247 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP-----PPPPTGSP 301
Query: 782 APPASGSGXXXXQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXPAXXRXXTTPXXXR 949
PP +G + P PP PPT P P P + P R
Sbjct: 302 PPPPAGGSPPPPRAGSPP--PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/85 (24%), Positives = 23/85 (27%)
Frame = +2
Query: 632 SPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXX 811
SPPP PP P P P P P P PPA
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
Query: 812 XXQIXRXPXXSXAPPXXXPPTTGXP 886
+ +PP PPT P
Sbjct: 352 PPPRQKRQAPERSPPTGSPPTGSPP 376
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 1032 PXXXPXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHP 1211
P P G PP P A +P P SP P P A PP P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 39.5 bits (88), Expect = 0.006
Identities = 33/116 (28%), Positives = 37/116 (31%), Gaps = 1/116 (0%)
Frame = +2
Query: 605 RGXRXXP-AXSPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTX 781
RG R P A SPPP PP S P P P T P P T +
Sbjct: 232 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP-----PPPPTGSP 286
Query: 782 APPASGSGXXXXQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXPAXXRXXTTPXXXR 949
PP +G + P PP PPT P P P + P R
Sbjct: 287 PPPPAGGSPPPPRAGSPP--PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/85 (24%), Positives = 23/85 (27%)
Frame = +2
Query: 632 SPPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXX 811
SPPP PP P P P P P P PPA
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
Query: 812 XXQIXRXPXXSXAPPXXXPPTTGXP 886
+ +PP PPT P
Sbjct: 337 PPPRQKRQAPERSPPTGSPPTGSPP 361
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 1032 PXXXPXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHP 1211
P P G PP P A +P P SP P P A PP P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.9 bits (84), Expect = 0.017
Identities = 26/101 (25%), Positives = 31/101 (30%)
Frame = +2
Query: 635 PPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXXX 814
PPP+K P +A SS P P P+ P PP +G
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 815 XQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXPAXXRXXTTP 937
P S PP PP G P P P + P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.9 bits (84), Expect = 0.017
Identities = 26/101 (25%), Positives = 31/101 (30%)
Frame = +2
Query: 635 PPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXXX 814
PPP+K P +A SS P P P+ P PP +G
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 815 XQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXPAXXRXXTTP 937
P S PP PP G P P P + P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.9 bits (84), Expect = 0.017
Identities = 26/101 (25%), Positives = 31/101 (30%)
Frame = +2
Query: 635 PPPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXXX 814
PPP+K P +A SS P P P+ P PP +G
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 328
Query: 815 XQIXRXPXXSXAPPXXXPPTTGXPLPXXXHXPAXXRXXTTP 937
P S PP PP G P P P + P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 35.5 bits (78), Expect = 0.092
Identities = 26/92 (28%), Positives = 26/92 (28%)
Frame = -1
Query: 1342 GXXXAGXXGXGAGXXGXXXGXVXWXXVXMXRXGXVLXXXXPVXXGCXXGGGRRXXLAAXW 1163
G G G G G G G G P G GGG
Sbjct: 76 GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGG 135
Query: 1162 GXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
G G G G CG G G G GG G G
Sbjct: 136 GGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGG 167
Score = 31.5 bits (68), Expect = 1.5
Identities = 29/101 (28%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
Frame = -1
Query: 1363 CXMGAXCGXXXAGXXGXGAGXXGXXX--GXVXWXXVXMXRXGXVLXXXXPVXXGCXXGGG 1190
C G CG G G G G G G G GC GGG
Sbjct: 79 CGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGG 138
Query: 1189 RRXXLAAXWGXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
G G G G CG G G G GG G G
Sbjct: 139 --GGCGGGGGGGCGGGGGG---CGGGGGGCGGGGGGCGGGG 174
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 1097 GGXXGXGXARXAXXVGXGVXGRCGXGXXXWSGGVGGXVCPXXRXXGGXC 951
GG G G G G G CG G GG GG C GG C
Sbjct: 63 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGG--CGGGGGCGGGC 109
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 35.1 bits (77), Expect = 0.12
Identities = 28/99 (28%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Frame = -1
Query: 1354 GAXCGXXXAGXXGXGAGXX---GXXXGXVXWXXVXMXRXGXVLXXXXPVXXGCXXGGGRR 1184
G CG G G G G G G P GC GGG
Sbjct: 31 GGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGC 90
Query: 1183 XXLAAXWGXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
G G G G CG G G G GG G G
Sbjct: 91 GGGGGGCGGGGGCGGGG-GGCGGGGGGCGGGGGGCGGGG 128
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -1
Query: 1210 GCXXGGGRRXXLAAXWGXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
GC GGG G G G G CG G G G GG G G
Sbjct: 89 GCGGGGGGCGGGGGCGGGGGGCGGGG-GGCGGGGGGCGGGGGGCGGGG 135
Score = 29.9 bits (64), Expect = 4.6
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = -1
Query: 1354 GAXCGXXXAGXXGXGAGXXGXXXGXVXWXXVXMXRXGXVLXXXXPVXXGCXXGGGRRXXL 1175
G CG G G G G G G G GC GGG
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Query: 1174 AAXWGXGXXXGXXGEXXCGWXGVGAXG 1094
+ G G G CG G G
Sbjct: 174 GSSGGGGYAVAPSGGGGCGGGGSSGGG 200
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 35.1 bits (77), Expect = 0.12
Identities = 28/99 (28%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Frame = -1
Query: 1354 GAXCGXXXAGXXGXGAGXX---GXXXGXVXWXXVXMXRXGXVLXXXXPVXXGCXXGGGRR 1184
G CG G G G G G G P GC GGG
Sbjct: 31 GGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGC 90
Query: 1183 XXLAAXWGXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
G G G G CG G G G GG G G
Sbjct: 91 GGGGGGCGGGGGCGGGG-GGCGGGGGGCGGGGGGCGGGG 128
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -1
Query: 1210 GCXXGGGRRXXLAAXWGXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
GC GGG G G G G CG G G G GG G G
Sbjct: 89 GCGGGGGGCGGGGGCGGGGGGCGGGG-GGCGGGGGGCGGGGGGCGGGG 135
Score = 29.9 bits (64), Expect = 4.6
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = -1
Query: 1354 GAXCGXXXAGXXGXGAGXXGXXXGXVXWXXVXMXRXGXVLXXXXPVXXGCXXGGGRRXXL 1175
G CG G G G G G G G GC GGG
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Query: 1174 AAXWGXGXXXGXXGEXXCGWXGVGAXG 1094
+ G G G CG G G
Sbjct: 174 GSSGGGGYAVAPSGGGGCGGGGSSGGG 200
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 34.7 bits (76), Expect = 0.16
Identities = 32/130 (24%), Positives = 39/130 (30%), Gaps = 7/130 (5%)
Frame = +3
Query: 1026 PAPXXXPXTDXXRXPGXPXP--PXXPXAPTPXQPXXXSPXXP--XNXPXPH--XAASXXR 1187
P P P + PG P P P P P+P P P P N P P S
Sbjct: 930 PVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPN 989
Query: 1188 RPPPXXHPHXTGXXQXNTXPXRXIXTXXHXTXPXXXPXXPAPXPXXPAXXXPH-XAPIXX 1364
+P P P P P P+P P P+ +P
Sbjct: 990 KPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGP--SPNGPSPNGPTPNWPSPNGPSPNGP 1047
Query: 1365 NXRADXXXPG 1394
N +D PG
Sbjct: 1048 NGPSDPNKPG 1057
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 33.9 bits (74), Expect = 0.28
Identities = 19/63 (30%), Positives = 23/63 (36%)
Frame = +3
Query: 1026 PAPXXXPXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXX 1205
P P P T R P PP P P+P + +P P P S PPP
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTP--PSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRL 198
Query: 1206 HPH 1214
+ H
Sbjct: 199 NSH 201
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical protein
T11F9.9 protein.
Length = 299
Score = 33.5 bits (73), Expect = 0.37
Identities = 30/112 (26%), Positives = 30/112 (26%), Gaps = 2/112 (1%)
Frame = +3
Query: 1068 PGXPXP-PXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPHXTGXXQXNTX 1244
PG P P P P P QP P P P P A P G N
Sbjct: 129 PGRPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGSNGNPGSPGQDGQPG-APGNKG 187
Query: 1245 PXRXIXTXXHXTXPXXXPXXPAP-XPXXPAXXXPHXAPIXXNXRADXXXPGH 1397
P P P AP P P P AP PGH
Sbjct: 188 PSGQNGNPGAPGAP-GQPGQDAPSEPITPGAPGPQGAPGPQGPPGQPGQPGH 238
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/60 (25%), Positives = 17/60 (28%)
Frame = +3
Query: 1068 PGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPHXTGXXQXNTXP 1247
PG P P P P +P P P P +P P G N P
Sbjct: 195 PGAPGAPGQPGQDAPSEPITPGAPGPQGAPGPQGPPGQPGQPGHDGQPGAPGPKGPNGNP 254
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical protein
F55C10.3 protein.
Length = 266
Score = 31.9 bits (69), Expect = 1.1
Identities = 29/112 (25%), Positives = 29/112 (25%), Gaps = 2/112 (1%)
Frame = +3
Query: 1068 PGXPXP-PXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPHXTGXXQXNTX 1244
PG P P P P P QP P P P P A P G N
Sbjct: 96 PGHPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNGNPGSPGQDGQPG-APGNKG 154
Query: 1245 PXRXIXTXXHXTXPXXXPXXPAP-XPXXPAXXXPHXAPIXXNXRADXXXPGH 1397
P P P AP P P P P PGH
Sbjct: 155 PSGPNGNPGAPGAP-GQPGQDAPSEPITPGAPGPQGTPGPQGPPGQPGQPGH 205
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/60 (25%), Positives = 17/60 (28%)
Frame = +3
Query: 1068 PGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPHXTGXXQXNTXP 1247
PG P P P P +P P P P +P P G N P
Sbjct: 162 PGAPGAPGQPGQDAPSEPITPGAPGPQGTPGPQGPPGQPGQPGHDGQPGAPGPKGPNGNP 221
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical protein
F55C10.2 protein.
Length = 299
Score = 31.9 bits (69), Expect = 1.1
Identities = 29/112 (25%), Positives = 29/112 (25%), Gaps = 2/112 (1%)
Frame = +3
Query: 1068 PGXPXP-PXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPHXTGXXQXNTX 1244
PG P P P P P QP P P P P A P G N
Sbjct: 129 PGRPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNGNPGSPGQDGQPG-APGNKG 187
Query: 1245 PXRXIXTXXHXTXPXXXPXXPAP-XPXXPAXXXPHXAPIXXNXRADXXXPGH 1397
P P P AP P P P P PGH
Sbjct: 188 PSGPNGNPGAPGAP-GQPGQDAPSEPITPGAPGPQGTPGPQGPPGQPGQPGH 238
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/60 (25%), Positives = 17/60 (28%)
Frame = +3
Query: 1068 PGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPHXTGXXQXNTXP 1247
PG P P P P +P P P P +P P G N P
Sbjct: 195 PGAPGAPGQPGQDAPSEPITPGAPGPQGTPGPQGPPGQPGQPGHDGQPGAPGPKGPNGNP 254
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical protein
C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +3
Query: 1026 PAPXXXPXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXX 1205
P+P +D P PP P PT P P P P RRPP
Sbjct: 227 PSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPP---GPPGPPTRRPPGPPGPPTRRPPGHQ 283
Query: 1206 HPHXT 1220
H T
Sbjct: 284 GHHIT 288
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Frame = +3
Query: 1026 PAPXXXPXTDXXRXPGXPXP-PXXPXA-PTPXQPXXXSPXXPXNXPXPHXAASXXRRP-- 1193
P+P +D G P P P P P P P P P P P S +P
Sbjct: 88 PSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSEDHQPSG 147
Query: 1194 PPXXHP 1211
PP P
Sbjct: 148 PPSPGP 153
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +3
Query: 1026 PAPXXXPXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXX 1205
PAP P P P AP P Q P P + P P PPP
Sbjct: 99 PAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPP-----PPHYPPPPP 153
Query: 1206 HPH 1214
PH
Sbjct: 154 APH 156
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical protein
C56A3.1 protein.
Length = 393
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -1
Query: 1210 GCXXGGGRRXXLAAXWGXGXXXGXXGEXXCGWXGVGAXGXXGGXGXPG 1067
GC GGG G G G G CG G G G GG G G
Sbjct: 89 GC--GGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGGGGG 134
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/79 (26%), Positives = 26/79 (32%)
Frame = +2
Query: 638 PPSKXXXXXPPXNAXMSSPEXXXXP*PSPQXTXXPLRHXGPXCXTXTXAPPASGSGXXXX 817
PP + P SS + P P P P P T + APPA +
Sbjct: 375 PPVRQNPPMPAVQQAPSSQQATQAP-PKPAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQ 433
Query: 818 QIXRXPXXSXAPPXXXPPT 874
Q P S + P P T
Sbjct: 434 QQASAPPTSPSAPVQAPNT 452
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical protein
T04F8.8 protein.
Length = 165
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +3
Query: 1071 GXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPPXXHPH 1214
G P P P P QP P P P +P P PH
Sbjct: 90 GRPQGYVPPPPPPPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQPEPH 137
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +3
Query: 1044 PXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPP 1199
P R PG PP P P+ P P P P P PPP
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAG-PGMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +3
Query: 1044 PXTDXXRXPGXPXPPXXPXAPTPXQPXXXSPXXPXNXPXPHXAASXXRRPPP 1199
P R PG PP P P+ P P P P P PPP
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAG-PGMYPPPPPSRPPAPPSGHGMIPPPPP 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.130 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,901,139
Number of Sequences: 27780
Number of extensions: 177144
Number of successful extensions: 885
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4016977708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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