Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O22
(1163 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 46 4e-05
09_02_0096 - 4221935-4222231 38 0.020
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615... 34 0.25
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 34 0.25
01_05_0639 + 23873735-23873814,23873932-23874148,23874259-238744... 33 0.43
05_04_0372 + 20726103-20726139,20726266-20726302,20726953-207270... 32 0.75
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 30 3.0
05_02_0137 + 6996336-6996415,6998240-6998351,6999292-6999453,699... 29 9.3
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 46.4 bits (105), Expect = 4e-05
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 8/153 (5%)
Frame = +1
Query: 301 IYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDD-TMIQVNMFGLALNIIYVMIYFNYS 477
IYK ST+G +P++ + +L + Y + D+ +I +N G + IY+ +Y Y+
Sbjct: 36 IYKSKSTQGFQSVPYVVALFSAMLWIYYALLKSDECLLITINSAGCVIETIYIAVYLVYA 95
Query: 478 QQKVKVW-------AQIGLAGAVSAALIGYAQTEDPKLVETXFGTIITAFMXYLIAXPXX 636
+K K++ +G+ G + L D ++V G + F + P
Sbjct: 96 PKKAKMFTAKLLLLVNVGVFGLI-LLLTLLLSAGDRRIV--VLGWVCVGFSVSVFVAPLS 152
Query: 637 GLKXIIXNXSTXXMPXPIILXGTXXTXXWXXXG 735
++ ++ S MP + T W G
Sbjct: 153 IIRLVVRTKSVEFMPFSLSFSLTISAVVWFLYG 185
>09_02_0096 - 4221935-4222231
Length = 98
Score = 37.5 bits (83), Expect = 0.020
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +1
Query: 226 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 402
+ +VG + ++ G S W I K+ + P+L ++ +L + YG I+
Sbjct: 8 RNVVGIVGNAISFGLFLSPVLTFWRIIKEKDMKYFKADPYLATLLNCMLWVFYGLPIVHP 67
Query: 403 DT--MIQVNMFGLALNIIYVMIYFNYSQQK 486
++ ++ +N GL + +Y+ I+F +S +K
Sbjct: 68 NSILVVTINGIGLVIEAVYLTIFFLFSNKK 97
>01_05_0637 +
23860857-23860936,23861057-23861273,23861388-23861549,
23862850-23863155
Length = 254
Score = 33.9 bits (74), Expect = 0.25
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 226 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 402
+ +VG I ++ G S W I K+ P+L ++ +L + YG I+
Sbjct: 8 RNVVGIIGNVISFGLFLSPVPTFWRICKRKDVEQFKADPYLATLLNCMLWVFYGIPIVHP 67
Query: 403 DT--MIQVNMFGLALNIIYVMIYFNYSQQKVKV 495
++ ++ +N GL + Y+ I+F YS K ++
Sbjct: 68 NSILVVTINGIGLIVEGTYLFIFFLYSPNKKRL 100
>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 33.9 bits (74), Expect = 0.25
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Frame = +1
Query: 301 IYKQGSTRGIGIMPFLGGVVMTILNLQYG--YILRDDTMI-QVNMFGLALNIIY--VMIY 465
I + GST MP++ ++ ++ L YG ++ ++ VN G + Y I
Sbjct: 878 IVRNGSTEQFSAMPYIYSLLNCLICLWYGLPFVSYGVVLVATVNSIGALFQLAYTATFIA 937
Query: 466 FNYSQQKVKVWAQIGLAGAVSAALIGYAQTE--DPKLVETXFGTIITAFMXYLIAXPXXG 639
F ++ +VKV + + + V ALI Y D + + G + A + ++ A P
Sbjct: 938 FADAKNRVKVSSLLVMVFGV-FALIVYVSLALFDHQTRQLFVGYLSVASLIFMFASPLSI 996
Query: 640 LKXIIXNXSTXXMP 681
+ +I S MP
Sbjct: 997 INLVIRTKSVEYMP 1010
>01_05_0639 +
23873735-23873814,23873932-23874148,23874259-23874420,
23876037-23876357
Length = 259
Score = 33.1 bits (72), Expect = 0.43
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 226 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 402
+ +VG I ++ G + W I K+ P+L ++ +L + YG ++
Sbjct: 8 RNVVGIIGNVISFGLFLAPVPTFWRICKRKDVEEFKADPYLATLLNCMLWVFYGIPVVHP 67
Query: 403 DT--MIQVNMFGLALNIIYVMIYFNYSQQKVKV 495
++ ++ +N GL + Y++I+F YS K ++
Sbjct: 68 NSILVVTINGIGLLVEGTYLLIFFLYSPNKKRL 100
>05_04_0372 +
20726103-20726139,20726266-20726302,20726953-20727048,
20728343-20728625,20728862-20728981,20729072-20729284
Length = 261
Score = 32.3 bits (70), Expect = 0.75
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 7/158 (4%)
Frame = +1
Query: 295 WDIYKQGSTRGIGIMPFLGGVVMTILNLQYG--YILRDDTMIQ-VNMFGLALNIIYVMIY 465
W I ++ ST +P+ ++ +L+ YG ++ ++ ++ +N G + YV+++
Sbjct: 29 WRIIRRKSTEDFSGVPYNMTLINCLLSAWYGLPFVSPNNILVSTINGAGAVIETAYVVVF 88
Query: 466 FNYSQQKVKVWAQIGLAGAVSAALIGYAQTEDPKL----VETXFGTIITAFMXYLIAXPX 633
++ +GLA AV++ A L + G T + A P
Sbjct: 89 LVFASTHKTRLRTLGLAAAVASVFAAVALVSLLALHGQHRKLLCGVAATVCSICMYASPL 148
Query: 634 XGLKXIIXNXSTXXMPXPIILXGTXXTXXWXXXGXXXR 747
++ +I S MP + L W G R
Sbjct: 149 SIMRLVIKTKSVEYMPFLMSLAVFLCGTSWFIYGLLGR 186
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 327 DRHHAVPRRCCYDH-PELAIWLHTP*RHHDSSQHV---RSGLKYHLRDDI 464
D AVP CC P IW+H P S H+ RSGL +H D+
Sbjct: 121 DNIDAVPSGCCLSSSPGSVIWVHKPPEGRRGSYHIRMDRSGL-FHTYPDM 169
>05_02_0137 +
6996336-6996415,6998240-6998351,6999292-6999453,
6999755-6999874,6999947-7000108
Length = 211
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 319 TRGIGIMPF---LGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQK 486
T+ + MPF L + ++ + YG I RD + N G + I+ +++Y YS+ K
Sbjct: 124 TKSVEFMPFYLSLFTLFTSLTWMAYGVIGRDPFIATPNCIGSIMGILQLVVYCIYSKCK 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,454
Number of Sequences: 37544
Number of extensions: 325796
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -