Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O21
         (1162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...   212   7e-56
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    41   3e-04
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   1.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    28   2.2  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   2.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    28   2.2  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   5.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   6.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   8.7  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.7  

>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score =  212 bits (518), Expect = 7e-56
 Identities = 100/195 (51%), Positives = 136/195 (69%)
 Frame = +1

Query: 280 VKVYALLVLYKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTHPASRQSVK 459
           +K+Y++ +L        +L  A DL SFS+FQRSS+ EFM F +KT+ ERT+P  RQ V+
Sbjct: 1   MKLYSVSILRFDPKPVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVE 60

Query: 460 EGEYMLQVYVRADNLAGVLISDHEYPNRVAHTLITKTLDEFTAAVPSSTWATGKESTIDF 639
           +  Y+  VY R+D L GV+ SD EYP RVA+TL+ K LDEF    P + W +G   T+ F
Sbjct: 61  QSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESG-AVTLSF 119

Query: 640 PSLALHLEKYQNPKEADALTKIQNDLDETKIILHDTIKAVLERGEKLDDLVAKSDSLSMH 819
           P L  +L KYQ+PK+AD + ++Q +LDETK +LH TI++VL RGEKLDDL+ +SD+LS  
Sbjct: 120 PELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQ 179

Query: 820 SKAFYKTAAKTNSCC 864
           S+ FYK+A K NSCC
Sbjct: 180 SRMFYKSAKKQNSCC 194


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 31/47 (65%)
 Frame = +1

Query: 703 IQNDLDETKIILHDTIKAVLERGEKLDDLVAKSDSLSMHSKAFYKTA 843
           IQ  +D+T  I+ + I  V ERGE+LD L  K+D+L++ ++ F + A
Sbjct: 35  IQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGA 81


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 652 LHLEKYQNPKEADALTKIQNDLDETKIILHDTIKAVLERGEKLDDLVAKSDSLSMHSKAF 831
           L L  +  P   D    +   + ET ++ H T+  + ER  +L  +      LS+ S+  
Sbjct: 147 LFLINFTIPAHNDLTHGVHYCIWETGVVYHPTM--LKERSYELHRVEVLRLLLSLFSEEI 204

Query: 832 YKTAAKTNSCCNF 870
           Y+T    +SCC +
Sbjct: 205 YRTDGNGSSCCAY 217


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 421 VERTHPASRQSVKEGEYMLQVYVR-ADNLAGVLISDHEYPNRVAHTLITKTLDEFTAAVP 597
           V  T P+    V   +Y ++V+    DN+  VL+    +  R +H      +D+ ++A+ 
Sbjct: 308 VAETAPSLVVKVVNQDYEVKVFYHYKDNIKYVLLDSPIFRKRTSHDPYPPRMDDISSAIF 367

Query: 598 SSTW 609
            S W
Sbjct: 368 YSVW 371


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 352 DHKHLSEWMHY*SLCTIQVVHKLSPFLLDNFYRSVSKIQ 236
           D+KHL+ +    +L  ++  ++ SPFLL    + + K +
Sbjct: 121 DYKHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFE 159


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 679 KEADALTKIQNDLDETKIILHDTIKAVLERGEKLDDLVAKSDSLSMHSKAFYKTAAKTNS 858
           ++ + L KI+ND  ++   L  +++    R   L+ LV      S  SKA  ++ ++ N 
Sbjct: 513 QDTELLGKIENDNSKSNDYL--SVRNTRPRSRSLNSLVGNKSENSSSSKAKSESKSQGNY 570

Query: 859 CCNF 870
            C F
Sbjct: 571 VCTF 574


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 601 STWATGKESTIDFPSLALHLEKYQNPKEADALTKI 705
           +TWA+  +ST D PS AL       PK A + T +
Sbjct: 30  ATWASALQSTKDVPSHALTKTIVLKPKTAKSQTVV 64


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 892 NHNNILFKNYNNC*FLPQSYKMLYCASTG-CLT*QPNHLTSHLSQ 761
           NH+N+  ++++ C F  +S   LYC +    L     +LTS L +
Sbjct: 256 NHSNVFRRSFHTCNFSLKSAASLYCDTQDILLNVNSQNLTSTLEK 300


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 307 YKGINNASILKGAYDLRSFSYFQRSSVQEFMTFVSKTMVERTH 435
           Y G    S+L G+Y +   S    ++   F+ FV    +ERT+
Sbjct: 301 YAGYYGMSLLTGSYAVLFASILAHAAQFGFLLFVENPHIERTY 343


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 682 EADALTKIQNDLDETKIILHDTIKAVLERGEKLDDLVAKSDSLSMHS 822
           EA   T  +NDLDE    L++    V++    +DD+V+ S  L+  S
Sbjct: 137 EAKGTTHGENDLDEVPTELNELANEVVD----VDDVVSPSSELNAQS 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,906,968
Number of Sequences: 5004
Number of extensions: 75142
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)