Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O18
         (1223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.0  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 340 GXGXGGEGFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
           G   GG G      GG GG RGG      G  G   G
Sbjct: 34  GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +1

Query: 337 KGXGXGGEGFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
           +G   GG G      GG GG RGG      G   G  G
Sbjct: 11  RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRG 48


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 346 GXGGEGFXXXXXGGGGGERGGXXXXXTGEXGG 441
           G  G G      GG GG RGG      G  GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGG 164


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 340 GXGXGGEGFXXXXXGGGGGERGGXXXXXTGEXGGXXGXP 456
           G G GG        GGG G  GG      G  GG  G P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.141    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,670
Number of Sequences: 5004
Number of extensions: 16428
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)