Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O18
(1223 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048271-1|AAH48271.1| 611|Homo sapiens ZC3H11A protein protein. 31 6.4
X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein. 31 8.5
U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding prot... 31 8.5
BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II... 31 8.5
AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II... 31 8.5
AK127997-1|BAC87222.1| 148|Homo sapiens protein ( Homo sapiens ... 31 8.5
AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein. 31 8.5
AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein. 31 8.5
>BC048271-1|AAH48271.1| 611|Homo sapiens ZC3H11A protein protein.
Length = 611
Score = 31.5 bits (68), Expect = 6.4
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 1038 GGXXKKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKK 1157
G KKKKK KKK KK KK KKKKK
Sbjct: 572 GNGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 611
>X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein.
Length = 589
Score = 31.1 bits (67), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 337 KGXGXGGE---GFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
+G G GG+ G+ GG GG+RGG G GG G
Sbjct: 456 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 496
>U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding protein
RBP56 protein.
Length = 592
Score = 31.1 bits (67), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 337 KGXGXGGE---GFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
+G G GG+ G+ GG GG+RGG G GG G
Sbjct: 459 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 499
>BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 592
Score = 31.1 bits (67), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 337 KGXGXGGE---GFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
+G G GG+ G+ GG GG+RGG G GG G
Sbjct: 459 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 499
>AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 589
Score = 31.1 bits (67), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 337 KGXGXGGE---GFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
+G G GG+ G+ GG GG+RGG G GG G
Sbjct: 456 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 496
>AK127997-1|BAC87222.1| 148|Homo sapiens protein ( Homo sapiens cDNA
FLJ46115 fis, clone TESTI2037085. ).
Length = 148
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 3 KKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 57
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 4 KKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 58
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 5 KKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 59
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 6 KKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 60
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 7 KKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 61
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 8 KKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 62
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 9 KKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 63
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 10 KKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 64
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 11 KKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 65
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 18 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKK 72
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 20 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKK 74
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 23 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKK 77
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 24 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKK 78
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 25 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKK 79
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 26 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKK 80
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 27 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 81
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 29 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKRK 83
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 30 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKRKK 84
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +3
Query: 1050 KKKKKXGGXXXXXXKKKXXXKKXXXXKKTXXKKKKKXXXXXFXXKKXPXKXXXXK 1214
KKKKK KKK KK KK KKKKK KK K K
Sbjct: 36 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKRKKKKKKKK 90
>AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein.
Length = 589
Score = 31.1 bits (67), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 337 KGXGXGGE---GFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
+G G GG+ G+ GG GG+RGG G GG G
Sbjct: 456 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 496
>AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein.
Length = 592
Score = 31.1 bits (67), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 337 KGXGXGGE---GFXXXXXGGGGGERGGXXXXXTGEXGGXXG 450
+G G GG+ G+ GG GG+RGG G GG G
Sbjct: 459 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 499
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.309 0.141 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,130,344
Number of Sequences: 237096
Number of extensions: 1232108
Number of successful extensions: 3953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3307
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17339562450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
- SilkBase 1999-2023 -