Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O17
(1163 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000198-1|AAH00198.1| 86|Homo sapiens splicing factor 3b, sub... 164 6e-40
AL031390-2|CAI19755.1| 86|Homo sapiens splicing factor 3b, sub... 164 6e-40
U87408-1|AAB47568.1| 453|Homo sapiens unknown protein. 32 3.5
BC103831-1|AAI03832.1| 887|Homo sapiens Bardet-Biedl syndrome 9... 32 3.5
AF095771-1|AAD25981.1| 802|Homo sapiens PTH-responsive osteosar... 32 3.5
DQ363529-1|ABC88012.1| 1099|Homo sapiens low-voltage-activated c... 31 8.0
DQ363528-1|ABC88011.1| 1083|Homo sapiens low-voltage-activated c... 31 8.0
DQ363527-1|ABC88010.1| 1088|Homo sapiens low-voltage-activated c... 31 8.0
DQ363526-1|ABC88009.1| 1077|Homo sapiens low-voltage-activated c... 31 8.0
AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel, voltag... 31 8.0
AF223563-1|AAF60163.1| 1536|Homo sapiens low-voltage-activated c... 31 8.0
AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated c... 31 8.0
AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel ... 31 8.0
AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-typ... 31 8.0
>BC000198-1|AAH00198.1| 86|Homo sapiens splicing factor 3b,
subunit 5, 10kDa protein.
Length = 86
Score = 164 bits (398), Expect = 6e-40
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +3
Query: 156 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 335
M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 336 KARVKFNLMERMLQPCGPPPEKPED 410
KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85
>AL031390-2|CAI19755.1| 86|Homo sapiens splicing factor 3b,
subunit 5, 10kDa protein.
Length = 86
Score = 164 bits (398), Expect = 6e-40
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +3
Query: 156 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 335
M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 336 KARVKFNLMERMLQPCGPPPEKPED 410
KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85
>U87408-1|AAB47568.1| 453|Homo sapiens unknown protein.
Length = 453
Score = 32.3 bits (70), Expect = 3.5
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 150 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 326
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 159 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 216
Query: 327 NESKARVKFNLMERML 374
+ + R+ +E +L
Sbjct: 217 HHFELRINGEKLEELL 232
>BC103831-1|AAI03832.1| 887|Homo sapiens Bardet-Biedl syndrome 9
protein.
Length = 887
Score = 32.3 bits (70), Expect = 3.5
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 150 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 326
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 593 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 650
Query: 327 NESKARVKFNLMERML 374
+ + R+ +E +L
Sbjct: 651 HHFELRINGEKLEELL 666
>AF095771-1|AAD25981.1| 802|Homo sapiens PTH-responsive
osteosarcoma B1 protein protein.
Length = 802
Score = 32.3 bits (70), Expect = 3.5
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 150 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 326
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 508 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 565
Query: 327 NESKARVKFNLMERML 374
+ + R+ +E +L
Sbjct: 566 HHFELRINGEKLEELL 581
>DQ363529-1|ABC88012.1| 1099|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 577
protein.
Length = 1099
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 368 FITFIICVNVITMSMEHYNQPKSL 391
>DQ363528-1|ABC88011.1| 1083|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 544
protein.
Length = 1083
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 363 FITFIICVNVITMSMEHYNQPKSL 386
>DQ363527-1|ABC88010.1| 1088|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 513
protein.
Length = 1088
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 357 FITFIICVNVITMSMEHYNQPKSL 380
>DQ363526-1|ABC88009.1| 1077|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 512
protein.
Length = 1077
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 357 FITFIICVNVITMSMEHYNQPKSL 380
>AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel,
voltage-dependent, T type, alphant regulator of
chromatin, sub protein.
Length = 2347
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 1616 FITFIICVNVITMSMEHYNQPKSL 1639
>AF223563-1|AAF60163.1| 1536|Homo sapiens low-voltage-activated
calcium channel alpha13.2 subunit delta25B splice
variant protein.
Length = 1536
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 805 FITFIICVNVITMSMEHYNQPKSL 828
>AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated
calcium channel alpha 1H protein.
Length = 2353
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 1622 FITFIICVNVITMSMEHYNQPKSL 1645
>AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel alpha
1H subunit protein.
Length = 2353
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 1622 FITFIICVNVITMSMEHYNQPKSL 1645
>AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-type
calcium channel alpha-1H subunit protein.
Length = 2373
Score = 31.1 bits (67), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 827 FLTFLLCINVKLLNSLHYREPPKL 898
F+TF++C+NV ++ HY +P L
Sbjct: 1642 FITFIICVNVITMSMEHYNQPKSL 1665
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,532,310
Number of Sequences: 237096
Number of extensions: 2435325
Number of successful extensions: 11102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11102
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16238637850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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