Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O17
         (1163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical pr...    36   0.072
U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical
           protein B0495.6 protein.
          Length = 87

 Score = 35.5 bits (78), Expect = 0.072
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 159 GERYNIHSQLEHLQSKYIGT 218
           GER+++ +QLEHLQSKY GT
Sbjct: 5   GERFHVLAQLEHLQSKYTGT 24


>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -1

Query: 962 MNTNLHFIAFPFEKXMYFLNFTILVVHGNVSYLTILHLYIIKMSKRNF 819
           M++ +H++  PFE  +Y     +L++   +S+L +    +IK  + N+
Sbjct: 345 MSSGIHYLILPFESFIY-ARLALLLLPSAISFLLLSVCLVIKKERLNY 391


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 377 LKHSFHQIEFYARFRFIFYDRKVTQQIRMTHVAAARVAMLVHKPFIFCSV 228
           L+ +   +  +A     +Y  K+    +++ V   R  ++VH P IFC++
Sbjct: 97  LRDASSMVALFAIVHVFYYRYKILSHQKLSSVQIMRNFIIVHLPAIFCAI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,539,705
Number of Sequences: 27780
Number of extensions: 431722
Number of successful extensions: 1021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)