Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O16
         (1207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...   112   1e-25
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    29   1.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   9.1  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   9.1  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    26   9.1  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   9.1  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score =  112 bits (269), Expect = 1e-25
 Identities = 59/183 (32%), Positives = 100/183 (54%)
 Frame = +1

Query: 181 MQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVD 360
           +Q++GL+G YAS+L++AA K   LD VEK L +    ++   + +++I +P + R  K  
Sbjct: 34  VQLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKKI 93

Query: 361 ALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLD 540
            +  +       P   N   +L +N RL  L  +   F  +M A RGE+  ++ +A PLD
Sbjct: 94  LVSSLTQMTGNEPLLKNFYNVLLDNHRLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLD 153

Query: 541 QAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKKYTELIS 720
                 LE+ + K   G   + ++ KV PS+IGG++V IGD  +D+SV S++    +L+S
Sbjct: 154 SKILSRLESRIAKSKYGKGKLLVSNKVTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLS 213

Query: 721 AAV 729
             +
Sbjct: 214 EPI 216


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 534 WFGCNNFTSYFTPVGSHHNLKSINDSLQFPQATI 433
           W G  +F + F  + +H  + S+N  L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 371  CFNASTFMLLFIVGLMMNSLSF-ASVLID 288
            C     F+LL   GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 476 LKALMTASSFPKRPFSASNPSRLPVVG 396
           L   +T  + P++PFS S+P+  P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 278 WQSSFSTMSSALVFDAAEKRA-EAYRPSNPNTCIWR 174
           W   +S   + L++   +  A   Y    PN+CIWR
Sbjct: 145 WTCHYSRQDNNLLYSGGDDAALVCYDQRIPNSCIWR 180


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 437 PFSASNPSRLPVVGERLILLATCFNASTFML 345
           PFS    S+LPV G   ILL   F  +T+++
Sbjct: 3   PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,955,488
Number of Sequences: 5004
Number of extensions: 81177
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)