Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O16
         (1207 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   5.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   9.4  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 410 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 306
           LP V + + LL + FN   FM+   V L +  L+F
Sbjct: 315 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNF 349


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 146 KCRISTNGKTSRCKYLDWKVGMLP 217
           +C    NG T    Y+DW V   P
Sbjct: 374 ECGKYPNGNTKVGSYIDWIVSQTP 397


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 114 KGNLLVRSLSTSVASAQMVKPPDASIWIGRSVCFRSFFSSIKDQGA*HRGKRTL 275
           K  L      T VAS    +PP  ++    S C  S ++ +K+    H G  TL
Sbjct: 163 KPPLTYHQFQTVVASMDPPEPPVPTV---TSACVGSAYTPLKEDHDDHYGVPTL 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,075
Number of Sequences: 438
Number of extensions: 5371
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)