Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O15
(1207 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 69 7e-12
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 38 0.019
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 33 0.40
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 33 0.40
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 33 0.40
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.0
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 6.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 8.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 8.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 8.7
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 68.9 bits (161), Expect = 7e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +2
Query: 203 MSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELGDAFIAF 343
MSVIIRL+NLP +A A D+R FF GL IP+G VHI+GG+ G+ F+ F
Sbjct: 1 MSVIIRLKNLPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVGF 47
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 37.5 bits (83), Expect = 0.019
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 212 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELG 325
+IRL+ +PWS D+R FF GL P + ++GG G
Sbjct: 158 VIRLRGVPWSCKEDDVRKFFEGLEPPPAEI-VIGGTGG 194
Score = 34.3 bits (75), Expect = 0.17
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 194 ETTMSVIIRLQNLPWSANALDIRNFFRGLSIPE-GGVHIVGGELGDAFIAFR 346
E S IRL+ LP++A DI FF GL+I V G G+A++ F+
Sbjct: 59 EPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFK 110
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 206 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 301
+V+ R + LPW A+ + FF GL I GG+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGI 211
Score = 32.3 bits (70), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 206 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAF 343
++I+R++ LP+ IR FF L + + + I G GDAF+ F
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQF 328
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 206 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 301
+V+ R + LPW A+ + FF GL I GG+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGI 211
Score = 32.3 bits (70), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 206 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAF 343
++I+R++ LP+ IR FF L + + + I G GDAF+ F
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQF 328
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 206 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGV 301
+V+ R + LPW A+ + FF GL I GG+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGI 211
Score = 32.3 bits (70), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 206 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAF 343
++I+R++ LP+ IR FF L + + + I G GDAF+ F
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQF 328
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 5.0
Identities = 20/75 (26%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Frame = +2
Query: 995 PXXGVXXRPPPXXXXXNXXXXXXGNPXGXXXPXVPPETPXXPPXP-----XXXXXKPXXX 1159
P V PPP P P PP P P P P
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 1160 XPXGXGGXXXXPPGG 1204
P G GG PP G
Sbjct: 326 GPPGMGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 5.0
Identities = 20/75 (26%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Frame = +2
Query: 995 PXXGVXXRPPPXXXXXNXXXXXXGNPXGXXXPXVPPETPXXPPXP-----XXXXXKPXXX 1159
P V PPP P P PP P P P P
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 1160 XPXGXGGXXXXPPGG 1204
P G GG PP G
Sbjct: 336 GPPGMGGMPPPPPPG 350
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 1064 GNPXGXXXPXVPPETPXXPPXPXXXXXKPXXXXP 1165
GNP G P PP T PP P P P
Sbjct: 117 GNPGGVPAPPNPPRTCCPPPTPAAPPPPPPPPPP 150
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 8.7
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +2
Query: 1019 PPPXXXXXNXXXXXXGNPXGXXXPXVPPETPXXPPXPXXXXXKPXXXXPXGXGGXXXXPP 1198
PPP G P +PP + PP P P P GG PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 8.7
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +2
Query: 1019 PPPXXXXXNXXXXXXGNPXGXXXPXVPPETPXXPPXPXXXXXKPXXXXPXGXGGXXXXPP 1198
PPP G P +PP + PP P P P GG PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 8.7
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +2
Query: 1019 PPPXXXXXNXXXXXXGNPXGXXXPXVPPETPXXPPXPXXXXXKPXXXXPXGXGGXXXXPP 1198
PPP G P +PP + PP P P P GG PP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,152
Number of Sequences: 27780
Number of extensions: 299088
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3318157644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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