Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O14
         (1238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     44   3e-04
01_06_1051 - 34127251-34127510,34128625-34128868                       33   0.35 

>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 359 RPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRH 463
           +P+ +KR R HG+  R ST  GR++I RR+ KGRH
Sbjct: 108 QPSTIKRKRTHGFLTRKSTKGGRKVIARRIAKGRH 142


>01_06_1051 - 34127251-34127510,34128625-34128868
          Length = 167

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 383 RRHGWDFRMSTPNGRRIIMRRLLKGRHVL 469
           R HG+  RM T  GR+++ RR  KGR VL
Sbjct: 125 RTHGFRRRMRTTAGRKVLKRRRAKGRRVL 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,993
Number of Sequences: 37544
Number of extensions: 188534
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)