Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O12
(1200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 124 2e-28
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 75 1e-13
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 50 4e-06
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 33 0.45
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 30 3.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 5.5
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 7.3
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 29 7.3
>04_04_0337 - 24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 124 bits (298), Expect = 2e-28
Identities = 88/297 (29%), Positives = 141/297 (47%), Gaps = 15/297 (5%)
Frame = +2
Query: 158 VEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNSLRSRANY 334
+E+ +DS + + DCDGVIW D L V E ++ +GK + FV+NNS +SR Y
Sbjct: 72 LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131
Query: 335 EAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETKRVLEAHGFKCKEG 508
+F+ ++ E + S A A YL+S+ F +K VY + + LE GF+ G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191
Query: 509 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFKINLPKM-YRAITYLKRPEVLF 661
P G + G Y+++ +D I GAVV D N K+ Y + + P LF
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLF 251
Query: 662 INGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGKPGRVFGEFAMKRAGITDPSR 841
I D + + K+EP+++GKP ++ K+ GIT S+
Sbjct: 252 IATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT-TSQ 310
Query: 842 VLFIGDMIAQDVSLGKAVGFNTLLVLTNTTKEEM---XSHTIRPDYYAXXLGSXVPL 1003
+ +GD + D+ G+ G TLLVL+ T +M ++I+PD+Y + + L
Sbjct: 311 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 367
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 74.9 bits (176), Expect = 1e-13
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Frame = +2
Query: 152 LSVEDLHKFLDSFDHVLSDCDGVIWTQDSLPR-VGEFFKQMKKRGKTVNFVSNNSLRSRA 328
L+ + +DS D L DCDGVIW D L V E ++K GK + FV+NNS +SR
Sbjct: 10 LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRR 69
Query: 329 NYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETKRVLEAHGFKCK 502
Y +F+A ++ E + S A A +LK F+ K VY V L GF+C
Sbjct: 70 QYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECL 129
Query: 503 EGP 511
GP
Sbjct: 130 GGP 132
Score = 46.8 bits (106), Expect = 3e-05
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +2
Query: 602 INLPKMYRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGK 781
+N +Y ++ + P LFI D M V++EP+++GK
Sbjct: 192 VNRLLLYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGK 251
Query: 782 PGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVGFNTLLVLT 922
P +F +K + + SR+ +GD + D+ G+ G TLLVL+
Sbjct: 252 PSSFLMDFLLKSFNL-ETSRMCMVGDRLDTDILFGQNTGCKTLLVLS 297
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 50.0 bits (114), Expect = 4e-06
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +2
Query: 263 KQMKKRGKTVNFVSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NK 436
+ + +GK + FV+NNS +SR Y +F+ ++ E + S A YL+S+ F +K
Sbjct: 58 RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117
Query: 437 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 580
VY + + LE GF+ GP G + + Y+E D+++ +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 33.1 bits (72), Expect = 0.45
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +2
Query: 758 REPVLLGKPGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVGFNTLLV 916
+ P+L KP E A++ A + DP + +F D + ++++ GKA GF+T++V
Sbjct: 578 KSPILC-KPSIEAMEAAIRIANV-DPEKTIFFDDSV-RNIASGKAAGFHTVIV 627
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +2
Query: 383 IIPSIAVAEYLKSVTFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 556
++PS+ Y + F++T+Y + C+ ++KRV++ K E L E + + E
Sbjct: 24 VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77
Query: 557 DDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGATDRM 685
+D+ G + D +N+ I R ++F+NG+ D +
Sbjct: 78 EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDDEI 120
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 29.5 bits (63), Expect = 5.5
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 718 DGSFYRSGYGRSETRARAAWE--ARKGFR*IRYEASRHHRSQSSSFYR*HDRPRCISRES 891
DG RSG GRS +R+R+ + +R R R+ SR RS+S S R + R R SR
Sbjct: 585 DGRSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSR-TRSRSRSRSRSYTRNRRASRSR 643
Query: 892 S 894
S
Sbjct: 644 S 644
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.1 bits (62), Expect = 7.3
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +2
Query: 260 FKQMKKRGKTVNFVSNNSLRSR-ANYEAQFKAA---SIDNGFESLIIPSIAVAEYLKSVT 427
F++M ++ NF NS + R A + K A S+D+ + P A + S+T
Sbjct: 207 FRRMIRKRDCKNFPRKNSRKMRPATMQDFLKEAGLKSMDDVDNIEMAPLAAQFKLGHSLT 266
Query: 428 FNKTVYCV-TCTETKRVLEAHGFKCKEGPDLGPEYY 532
++ + V CT+ +RV E + KEG ++ P +Y
Sbjct: 267 TDEYRHVVGKCTQMRRVEEWYLQMAKEGKEMFPVFY 302
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 403 HCDRWNDQALKAVVDAGCFELSFIICSGSKAVIGNEIYCL-PAFLHL 266
HC + +D+ LKAV+ GC L ++ +G + + N + L + +HL
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHL 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,307,053
Number of Sequences: 37544
Number of extensions: 502709
Number of successful extensions: 1154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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