Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O11
         (1250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    30   3.9  

>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical protein
            C27H5.3 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -3

Query: 1074 FPXGEKGXXGFXLXXRXGNRGGXXGXFXGGNXWDF 970
            F  G  G  GF    R G RGG  G F GG+   F
Sbjct: 334  FDGGRGGGGGFRGGDRGGFRGGDRGGFRGGDRGGF 368



 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 1065 GEKGXXGFXLXXRXGNRGGXXGXFXGGNXWD 973
            G +G  G     R G RGG  G   GG+ WD
Sbjct: 116  GGRGGYGGDRGGRGGGRGGYDGERRGGSRWD 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,777,858
Number of Sequences: 27780
Number of extensions: 146863
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)