Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O10
         (1155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         34   0.24 
08_01_0534 - 4635122-4635380,4635716-4635837                           32   0.75 
11_06_0480 - 24081075-24081723,24083427-24084202                       29   9.2  
05_06_0278 + 26894802-26895362                                         29   9.2  
01_06_1106 + 34563368-34563679                                         29   9.2  

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 40  SGSAAGLCQGYRVQRDRPNMWLGSRGPGATAG 135
           +  AAG CQ  R +R    +WLGS G G T G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 42  GQRSGTVPGXPRAT-RPPQHV----AGVAWARCDGRRRPATSLGLWTGRATDVTR 191
           GQR G  P    +  R  Q V    +GV W  C GR    +++G WTG A + TR
Sbjct: 46  GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>11_06_0480 - 24081075-24081723,24083427-24084202
          Length = 474

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 163 QRPSDVAGRRRPSHRAHATPATCWGGRVARGXPGTVP 53
           +RP  ++ RR  S  + + PA+C GGRV      +VP
Sbjct: 62  RRPHLLSLRRPSSSSSSSVPASCGGGRVDGDLTASVP 98


>05_06_0278 + 26894802-26895362
          Length = 186

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 48  RSGTVPGXPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLDDSRP 209
           RSG  P  P++ RP   +AGV      GR    T      G +T     DD +P
Sbjct: 75  RSGGAPPPPQSNRPVTPLAGVDGGVSGGRAPTNTPPSPQPGGSTKPLSDDDGKP 128


>01_06_1106 + 34563368-34563679
          Length = 103

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 146 RWTPPAVAPGPRDPSHMLGRSRCTRXPWH--SPAALPESXXKDSL 18
           R  P A AP P +  H  G +RC R PW    PA L     K  L
Sbjct: 37  RVPPSASAPPPAELRH--GPNRCRRPPWRRLQPARLRHGPDKHHL 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,603,236
Number of Sequences: 37544
Number of extensions: 364425
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3514835996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)