Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O05
(1137 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.73
08_02_0839 + 21693348-21694853 31 2.2
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 30 3.0
02_04_0400 - 22608519-22608844,22609044-22609122 30 3.9
01_03_0005 + 11568545-11569119,11569179-11569191 30 3.9
06_01_0486 - 3455030-3455770 29 5.2
04_04_1542 - 34264994-34265331,34266195-34267029 24 6.1
12_02_1174 - 26696869-26698191 29 6.8
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 6.8
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 9.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.73
Identities = 18/71 (25%), Positives = 18/71 (25%)
Frame = +2
Query: 401 PAXXXXPPXXPXXXPXPXXPPPXXXXXPPXXXXXPPXXXXXXXXXXXXXXXPXXXPXXXX 580
PA PP P P PPP PP PP P P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Query: 581 XXXPXXPXXPP 613
P PP
Sbjct: 371 GGKKGGPPPPP 381
>08_02_0839 + 21693348-21694853
Length = 501
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 419 PPXXPXXXPXPXXPPPXXXXXPPXXXXXPP 508
PP P P P PPP PP PP
Sbjct: 16 PPTSPLQLPLPYLPPPPPPPQPPLLQLQPP 45
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 507 GGXXXXXGGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPP 379
GG GG G G G G G GG G P P P
Sbjct: 15 GGGGGGGGGGGGGRGNGGGGFGGGGGGGGGNHGYYGRGPQPQP 57
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -1
Query: 507 GGXXXXXGGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
GG GG GGG G G G GG G PP G
Sbjct: 54 GGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNG 99
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 465 GGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXGXXXXXPFFFXXFFSPF 322
GGG G G G GG G P PPP PF++ PF
Sbjct: 119 GGGGGGGGWQQGGGGG-----GAYPTPPPPNPFLPYFPFYYYSPPPPF 161
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +3
Query: 399 PPXXXPXXPXXXXXXXXPXXXPPXXXXLPXXXXXXXPXXXPXPXPPXXXXPPXXXP 566
PP P P P PP +P P P P PP PP P
Sbjct: 97 PPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPP--SPPPYVPP 150
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 24.2 bits (50), Expect(2) = 6.1
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +2
Query: 443 PXPXXPPPXXXXXPPXXXXXPP 508
P P PPP PP PP
Sbjct: 253 PPPPQPPPSSLQLPPAVVAPPP 274
Score = 23.4 bits (48), Expect(2) = 6.1
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 419 PPXXPXXXPXPXXPPP 466
PP P P P PPP
Sbjct: 217 PPPPPLALPLPPPPPP 232
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +3
Query: 399 PPXXXPXXPXXXXXXXXPXXXPPXXXXLPXXXXXXXPXXXPXPXPPXXXXPPXXXP 566
PP P P PP P P P P PP PP P
Sbjct: 137 PPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPP 192
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +2
Query: 383 GGGGXXPAXXXXPPXXPXXXPXPXXPPPXXXXXPPXXXXXPP 508
GG A P P P P PPP PP PP
Sbjct: 337 GGTQENNATSDAPKLMPPPPPPPPPPPPPPPPPPPRPPPPPP 378
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.7 bits (61), Expect = 9.0
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Frame = -1
Query: 393 PPPPPXXGXXXXXPFF-FXXF---FSPFXXFPXN--PXXPXFXXXXLFXPPFFXXXXPXP 232
PPPPP G P F P P N P P + PP F P
Sbjct: 457 PPPPPTTGSFMPIPSAPFAGLPVPAGPMTAVPYNSYPVFPPMNYPMVNIPPPFPSAPNTP 516
Query: 231 PXFFXFXGPLXPPXGGTP 178
P F GP P P
Sbjct: 517 PGFQGLAGPFYGPPYPAP 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.150 0.521
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,455
Number of Sequences: 37544
Number of extensions: 166540
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3444772820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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