Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_O05
(1137 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 36 0.040
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.49
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.49
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.65
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 32 0.86
AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 31 1.5
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 30 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.1
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 8.1
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 36.3 bits (80), Expect = 0.040
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -1
Query: 507 GGXXXXXGGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPP 379
GG GG GGG G G GG G PPPPP
Sbjct: 73 GGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPP 115
Score = 35.9 bits (79), Expect = 0.053
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -1
Query: 507 GGXXXXXGGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
GG GG GGG G G G GG PPPP G
Sbjct: 75 GGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGG 120
Score = 33.5 bits (73), Expect = 0.28
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 486 GGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPP 379
GG GG G G G GG G PPPPP
Sbjct: 23 GGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPP 58
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 486 GGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
GG GGG G G G GG PPPPP G
Sbjct: 26 GGGGGGCGGGCGGGGGCGG--GGGCGGGCAPPPPPPACG 62
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = -3
Query: 553 GGXXXXGGXGXGXXXGXXXXXXXGXXXXXGGXXXGXXXXXXXXGXXGXXXGGXXPPPP 380
GG GG G G G G GG G G G GG PPPP
Sbjct: 62 GGGCGGGGGGCGGGGGGC-----GGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPP 114
Score = 29.5 bits (63), Expect = 4.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -1
Query: 486 GGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
GG GG G G G GG PPPP G
Sbjct: 25 GGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGG 63
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.49
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 465 GGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
GGG G G G GG G PPP P G
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGG 57
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -1
Query: 507 GGXXXXXGGXXXXXGGGXXGX-GXXXGXXGGXXXXAGXXPPPPP 379
GG GG GGG G G G GG A PPPP
Sbjct: 262 GGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPP 305
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.49
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 465 GGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
GGG G G G GG G PPP P G
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGG 57
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -1
Query: 507 GGXXXXXGGXXXXXGGGXXGX-GXXXGXXGGXXXXAGXXPPPPP 379
GG GG GGG G G G GG A PPPP
Sbjct: 262 GGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPP 305
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.65
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 465 GGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXGXXXXXPF 349
GGG G G G G PPPPP G P+
Sbjct: 189 GGGGGGMGGGGGSGGSGGGSGRFPPPPPPYGGGGRRRPY 227
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 31.9 bits (69), Expect = 0.86
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 504 GXXXXXGGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
G GG GG G G G GG PPPPP G
Sbjct: 32 GGGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPPPPQCG 76
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = -1
Query: 504 GXXXXXGGXXXXXGGGXXGXGXXXGXXGGXXXXAGXX----PPPPP 379
G GG GGG G G G GG G PPPPP
Sbjct: 26 GGAGGCGGGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPP 71
>AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like
(grd related) protein31 protein.
Length = 156
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 459 GXXGXGXXXGXXGGXXXXAGXXPPPPPXXG 370
G G G G GG G PPPPP G
Sbjct: 26 GGAGGGGCGGCGGGCGGGCGCAPPPPPCCG 55
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 465 GGGXXGXGXXXGXXGGXXXXAGXXPPPPP 379
GGG G G G G AG PPPP
Sbjct: 13 GGGGGGGGGGGGGEAGYSGGAGVEAPPPP 41
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 465 GGGXXGXGXXXGXXGGXXXXAGXXPPPPP 379
GGG G G G GG A PPPPP
Sbjct: 17 GGGGGGGGGEAGYSGGAGVEA--PPPPPP 43
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/65 (24%), Positives = 16/65 (24%)
Frame = +2
Query: 419 PPXXPXXXPXPXXPPPXXXXXPPXXXXXPPXXXXXXXXXXXXXXXPXXXPXXXXXXXPXX 598
PP P P PPP PP PP P P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Query: 599 PXXPP 613
P PP
Sbjct: 349 PPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/65 (24%), Positives = 16/65 (24%)
Frame = +2
Query: 419 PPXXPXXXPXPXXPPPXXXXXPPXXXXXPPXXXXXXXXXXXXXXXPXXXPXXXXXXXPXX 598
PP P P PPP PP PP P P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Query: 599 PXXPP 613
P PP
Sbjct: 359 PPPPP 363
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 28.7 bits (61), Expect = 8.1
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -1
Query: 486 GGXXXXXGGGXXGXGXXXGXXGGXXXXAGXXPPPP 382
GG GGG G G G G G P PP
Sbjct: 483 GGGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPSPP 517
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.150 0.521
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,806,598
Number of Sequences: 27780
Number of extensions: 92128
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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