Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O04
         (1158 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RC77 Cluster: NAD(P) transhydrogenase beta subunit, p...    34   6.1  
UniRef50_Q232J7 Cluster: ABC transporter family protein; n=4; Te...    34   6.1  
UniRef50_UPI0000F2C19B Cluster: PREDICTED: similar to zinc finge...    34   8.0  

>UniRef50_Q7RC77 Cluster: NAD(P) transhydrogenase beta subunit,
           putative; n=8; cellular organisms|Rep: NAD(P)
           transhydrogenase beta subunit, putative - Plasmodium
           yoelii yoelii
          Length = 1201

 Score = 34.3 bits (75), Expect = 6.1
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = -2

Query: 578 FAHY*THNYVESNIQNILTNSCEP*INEKKHR*QPNYPD*QFNSQFGRFKLKNQIDIHNM 399
           F H   HN+   N++N L N+ E  INE+ +  + N    Q       F  +N ID +N 
Sbjct: 11  FLHLIGHNHCRLNLRNNLNNNYEQ-INERNNNKREN--SFQIKLPIINFPSENNID-YNY 66

Query: 398 TLNSQYYRFSLLLEYISVQ-NNYSIQTSVVTSLLL---LCCYMC 279
             N +    ++LL    ++  +YS   S++ S+ L   +C  +C
Sbjct: 67  KKNDRTQEHTILLNNDKIEAPSYSFIPSLLNSIYLFSSICFILC 110


>UniRef50_Q232J7 Cluster: ABC transporter family protein; n=4;
           Tetrahymena thermophila SB210|Rep: ABC transporter
           family protein - Tetrahymena thermophila SB210
          Length = 1474

 Score = 34.3 bits (75), Expect = 6.1
 Identities = 18/77 (23%), Positives = 40/77 (51%)
 Frame = +2

Query: 185 AFDE*ESKIAK*LRVSKIETYLLV*SLCVSQYTYNNITTTMTLLLKFELNNYFAH*CILT 364
           A++E   K  K +R +++   L++  +   Q ++ +I   +  L+ F    YF    +LT
Sbjct: 449 AWEEAFIKFVKIIRENELSKILIIQIIYSFQQSFTSIVDLLACLISFLSTYYFGDPSVLT 508

Query: 365 IMKICNIDYLVSYYEYQ 415
           + K+ ++  L S+ +Y+
Sbjct: 509 VPKMISVMNLFSFIKYE 525


>UniRef50_UPI0000F2C19B Cluster: PREDICTED: similar to zinc finger
           CCCH-type containing 12D; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to zinc finger
           CCCH-type containing 12D - Monodelphis domestica
          Length = 639

 Score = 33.9 bits (74), Expect = 8.0
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 24  SGEXSIXHXPLYS---QSSLTHSLSGCPNLHYIHSFILLLQKKRKLF 155
           SGE +     LY+   Q  +   +S  PNL  I+S ILL+QK R+LF
Sbjct: 592 SGERAHVRTTLYNIFPQDEVDQVMSSFPNLVDINSLILLIQKNRRLF 638


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 885,306,423
Number of Sequences: 1657284
Number of extensions: 15541280
Number of successful extensions: 32892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32780
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 115066114169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)