Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_O03
         (1145 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   184   9e-47
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   182   4e-46
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     29   0.072
05_02_0037 + 5883285-5884292                                           31   1.3  
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     31   1.7  

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  184 bits (449), Expect = 9e-47
 Identities = 91/181 (50%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +3

Query: 93  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 272
           MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 273 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 452
                               YGKPK  G+ QLK  RN +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 453 VAQDSSYKYFEVILVDPSHKAIRRDPXINWIVNAVHXHRXMRGLTSXXXXSRXL-XKXHX 629
           V +DS+YKYFE+ILVD +H AIR DP INW+   VH HR +RGLTS     R L  K H 
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180

Query: 630 Y 632
           +
Sbjct: 181 H 181


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  182 bits (444), Expect = 4e-46
 Identities = 90/180 (50%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
 Frame = +3

Query: 96  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 275
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 276 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 455
                              YGKPK  G+ QLK  RN +S+AEE            +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 456 AQDSSYKYFEVILVDPSHKAIRRDPXINWIVNAVHXHRXMRGLTSXXXXSRXL-XKXHXY 632
            +DS+YKYFE+ILVD +H AIR DP INW+   VH HR +RGLTS     R L  K H +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 29.5 bits (63), Expect(2) = 0.072
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 480 FEVILVDPSHKAIRRDP 530
           FE+ILVD +H AIR DP
Sbjct: 299 FEIILVDVAHSAIRDDP 315



 Score = 25.0 bits (52), Expect(2) = 0.072
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 333 YGKPKSHGVNQLKPTRN 383
           Y KPK  G+ QLK  RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 176 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 328
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 404 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 276
           +++ G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,405
Number of Sequences: 37544
Number of extensions: 371659
Number of successful extensions: 815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3479804408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)