Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N24
         (1124 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-13|AAO12405.1|  148|Caenorhabditis elegans Hypothetical p...    97   3e-20
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   4.5  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   4.5  
Z81105-1|CAB03215.2|  142|Caenorhabditis elegans Hypothetical pr...    29   7.9  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   7.9  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   7.9  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   7.9  

>U88169-13|AAO12405.1|  148|Caenorhabditis elegans Hypothetical
           protein T03F1.12 protein.
          Length = 148

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 55/154 (35%), Positives = 79/154 (51%)
 Frame = +3

Query: 231 SFRYTQWDPCLIISQIVAMQSVMYLSLSLLVAIMQDLTGSTRTLDHLFEYHELHIVDNEG 410
           SFR   WDP L++SQ+  +Q+  Y + +  V +     G    +  +F            
Sbjct: 3   SFRQFVWDPVLLVSQMTCLQTFFYATQTS-VMLFCSFFGYEPLISSIFSIQTQ------- 54

Query: 411 RAVILAFVFNAVIGAFALWMIVGRTKLCLDFSCTYHGLHLIACWYYNGSFPTTFSWWTLN 590
           R++ L  + +AV  +FAL  +V R K CLDF+CT H  HLI    YN + PT F+WW L 
Sbjct: 55  RSMALIQLVSAVGVSFALSHLVQRAKQCLDFACTVHFFHLIFTTIYNHALPTQFTWWILQ 114

Query: 591 VACGAIMCVAGEFLCLRTELQAIPLXNIXAKVDL 692
           V    +  V GE+LC+R E Q I L    ++ DL
Sbjct: 115 VISTTVCTVLGEYLCMRIESQEIKLEGGPSRYDL 148


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 572  ESCGETSVVIPACDQMKSVVCATKIQAQLSSSNNHP*CKGTDDCIEN 432
            + CG+ S   P C Q++     T+  +      N   C G DDC +N
Sbjct: 3776 DDCGDGSDETPECAQIECKKGWTRCSSSYRCIPNWAFCNGQDDCRDN 3822


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 572  ESCGETSVVIPACDQMKSVVCATKIQAQLSSSNNHP*CKGTDDCIEN 432
            + CG+ S   P C Q++     T+  +      N   C G DDC +N
Sbjct: 3776 DDCGDGSDETPECAQIECKKGWTRCSSSYRCIPNWAFCNGQDDCRDN 3822


>Z81105-1|CAB03215.2|  142|Caenorhabditis elegans Hypothetical
           protein R05D7.1 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 381 HELHIVDNEGRAV-ILAFVFNAVIGAFALWMIVGRTKLCLDFSCTYHGLHLIACWYYN 551
           ++   + N  RAV +L  +F  V+       +   T +C       H LHL   WYYN
Sbjct: 5   YDFPTIVNHSRAVQVLCTIFQMVLIYTESAALSFLTFICYSLLVGMHMLHLARRWYYN 62


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 98   NTNIKKSXFYQLAWTLXAXNGDLKDSLY 15
            +T + KS F Q+ W++   NG+ KD+++
Sbjct: 1993 HTVLSKSNFNQMKWSVQCVNGNKKDAIH 2020


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 98   NTNIKKSXFYQLAWTLXAXNGDLKDSLY 15
            +T + KS F Q+ W++   NG+ KD+++
Sbjct: 1993 HTVLSKSNFNQMKWSVQCVNGNKKDAIH 2020


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 98   NTNIKKSXFYQLAWTLXAXNGDLKDSLY 15
            +T + KS F Q+ W++   NG+ KD+++
Sbjct: 1993 HTVLSKSNFNQMKWSVQCVNGNKKDAIH 2020


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,622,524
Number of Sequences: 27780
Number of extensions: 315135
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3036427278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)