Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N24
         (1124 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           29   0.075
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           29   0.075
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.6  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 0.075
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 DNISNSGNAVCNVPVS*SARGHHAGLDRLHE-NF 361
           D +  +GNA+ +   S S  GH  GL R H  NF
Sbjct: 27  DRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNF 60


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 29.1 bits (62), Expect = 0.075
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 DNISNSGNAVCNVPVS*SARGHHAGLDRLHE-NF 361
           D +  +GNA+ +   S S  GH  GL R H  NF
Sbjct: 28  DRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNF 61


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 150 NVYRDL*IFCRPKQCVVTMSKIKKFS 227
           NVY+D  I C    C   +S I  FS
Sbjct: 310 NVYKDALIVCTVNSCTSMLSGIVIFS 335


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 150 NVYRDL*IFCRPKQCVVTMSKIKKFS 227
           NVY+D  I C    C   +S I  FS
Sbjct: 363 NVYKDALIVCTVNSCTSMLSGIVIFS 388


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 282 AMQSVMYLSLSLLVAIMQDLTGSTRTLDHLFEYHE 386
           A++S +   + L     +DL    R+++HL  +HE
Sbjct: 735 AVKSTIQSLMKLKSPEWKDLAKKARSVNHLLTHHE 769


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 417  VILAFVFNAVIGAFA 461
            ++LAFVF   +GA+A
Sbjct: 1012 IVLAFVFRESVGAWA 1026


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,935
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37957815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)