Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N23
         (1135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   2.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   4.8  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   6.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 677 LTFFFFPIHFKSLMNEGPKNARSNVYN 757
           ++FFFFP+    + N  PKN +  +Y+
Sbjct: 58  VSFFFFPVSDDVIPNTNPKNCQCYLYH 84


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = +3

Query: 123 QPLYLRIDPY--RYPYNYKTNSNL---GQPQW 203
           Q + +++ PY  RYPY+++T+  L     PQW
Sbjct: 411 QNMIVKVSPYKHRYPYDWRTHKPLILRATPQW 442


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 563 INETYSMEIVLKLMLRHGSLILLEISINGLLF*EIKELLTFFFFPIHFKSLMNEGP 730
           +NE Y+    +       +L L  + +   L   I   +T++  PI+F+S+  +GP
Sbjct: 331 VNELYTTRTRIIAPSAFQTLSLSSVMVTSFLHYYIMSTVTYYI-PIYFQSIKGDGP 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,799,750
Number of Sequences: 5004
Number of extensions: 76521
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)