Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N23
         (1135 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.40 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 568 RNLFDGDRFKTYASSRVSNSSRNFYQRSIVLRNKRTTNVL 687
           +N  + D  K+Y     +N ++ FY+R I++  +R   V+
Sbjct: 294 KNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVI 333


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 913 VRMXKTCLKPDKYDWISKDGNKCRSL 836
           +R  K C     + WI  DG   R L
Sbjct: 358 MRAVKRCNATGAFSWIGSDGWSARGL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,566
Number of Sequences: 438
Number of extensions: 6006
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38319318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)