Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_N17
(1226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 130 5e-31
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 30 0.57
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 30 0.75
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 29 1.3
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 28 3.0
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 7.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 7.0
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 27 7.0
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 9.3
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 130 bits (313), Expect = 5e-31
Identities = 78/206 (37%), Positives = 110/206 (53%), Gaps = 4/206 (1%)
Frame = +3
Query: 321 DAVLEMQGTDLTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNFTVNDVRMCVGSRRILDVM 500
D M + +Y + GF P +F R ++ + +G L ++
Sbjct: 149 DGFRRMPAESVNFSYFRDTGFNEPTIFPSSDTQNTR----QLNLSKIATLIGYDCPLALV 204
Query: 501 DVNTQKNI--EMTMKDWQRYYD-DPNKE-RLLNVISLEFSHTRLENYVQAPRIVRLIDWV 668
DV TQK I +M M+ W +Y +P+K R+ +V+SLE S T+L YV+ P IVR +D V
Sbjct: 205 DVVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVRKPNIVRDLDLV 264
Query: 669 DTVWPRHLKDQQTESTNALDDMMYPKVXKYCLMSVKGCYTDFHIDFGGTSVWYHILRGAK 848
+TVWP + AL + YP V YCLMS + YT+FHI+FGG+S +Y+IL G K
Sbjct: 265 NTVWP--------PGSFALGE--YPHVDTYCLMSAENSYTEFHIEFGGSSAYYNILDGCK 314
Query: 849 VFGLIPPTEKNLXXYXKWVLSGXXSD 926
+F LIP T KN Y W+ S SD
Sbjct: 315 IFYLIPGTSKNWEAYTAWLTSSNDSD 340
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 30.3 bits (65), Expect = 0.57
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 798 IDFGGTSVWYHILRGAKVFGLIPPTEKN 881
+D+ +V++HIL A++F + P+EKN
Sbjct: 970 VDYAPLNVFHHILLKAQIFARMSPSEKN 997
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 29.9 bits (64), Expect = 0.75
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +3
Query: 378 GFTTPLLFKEKTGLGLRVPTSNFTVNDVRMCVGSRRILDVMDVNTQKNIEMTMKDWQRYY 557
G P L + TG+ RVPT + +V D+ + + + + + E MK Y
Sbjct: 218 GKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYT 277
Query: 558 DDPNKERLLNVISLEF---SHTRLENY---VQ-APRIVRLIDWVDTVW 680
+D +V+S +F +H+ + + +Q +P+ V+L+ W D W
Sbjct: 278 ED-------SVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEW 318
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.1 bits (62), Expect = 1.3
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Frame = +3
Query: 378 GFTTPLLFKEKTGLGLRVPTSNFTVNDVRMCVGSRRILDVMDVNTQKNIEMTMKDWQRYY 557
G P L + TG+ RVPT + +V D+ + + + + + E MK Y
Sbjct: 218 GKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYT 277
Query: 558 DDPNKERLLNVISLEF---SHTRLENY---VQ-APRIVRLIDWVDTVW 680
+D V+S +F +H+ + + +Q +P+ V+L+ W D W
Sbjct: 278 EDA-------VVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEW 318
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 27.9 bits (59), Expect = 3.0
Identities = 28/92 (30%), Positives = 37/92 (40%)
Frame = -1
Query: 353 EIGALHLQDCVGVLESLTLQLIGE*KPPAALRLIIAERPLVGVKLPVLAFTQLSWYLFFI 174
E+G + VG L L L I AL II +V + LP++ F LSW+
Sbjct: 4 ELGE-RISTSVGFLAELFLMKIPLFTVIVALLTIILG--IVNIFLPIVDFFGLSWHNLIN 60
Query: 173 IRQCFRHVYISQKHCTTKFTLFYVNILLXYTR 78
IR + Y H F L + I L R
Sbjct: 61 IRLHTLNTYPLVHHGVISFILGLLGIFLLMPR 92
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 7.0
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -1
Query: 740 VHHVIECVCRFSLLILQMSRPDGIDPIYQAYNTRSLHVVLEASVRKLQRDYVQ-ETLLVR 564
+HH + + + ++ +M + + PI N LEA+V++L V +TL
Sbjct: 1197 LHHTLNVLPKNKWILSRMHKMENGSPINVDKNLDDAVAALEAAVKELNDGSVNTKTLKFC 1256
Query: 563 I-VIVTLPILHGHLDVFLCVDIHYVEN 486
I V P + H L +HY+E+
Sbjct: 1257 IKVCKETPSMLYHSHGLLPAILHYIES 1283
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 185 LFFIIRQCFRHVYISQKHCTTKFTLF 108
LFF+++QC++ S CT + T++
Sbjct: 1368 LFFLMQQCYQRKTFSFVDCTRQITIY 1393
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 699 DPSNVEARRYRPNLSGVQYAELARSSRGECAKTPERLRSRDAPCS 565
DP ++ R Y ++ G+++A +C K L ++D PCS
Sbjct: 248 DPCSLRGRTY--DIDGIEFA--GTGDLKQCLKLTYNLLNKDKPCS 288
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 9.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 632 HVVLEASVRKLQRDYVQETLLVRIVIVTLPILHGHLDVFLC 510
H+V+E+ R Q YVQ+ + R IV + H H V+LC
Sbjct: 484 HLVVES--RSHQHAYVQDEIRHRGDIVWSVLSHPHGKVYLC 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,997,566
Number of Sequences: 5004
Number of extensions: 81148
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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