Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_N17
(1226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0149 - 20636801-20637044,20637859-20639180 34 0.20
10_08_0332 - 16843295-16843356,16843884-16846656 31 1.4
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 31 2.4
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770... 30 4.3
12_01_0240 + 1801797-1802014,1802314-1802411,1802556-1802638,180... 29 5.7
11_01_0243 + 1872229-1872446,1872745-1872842,1872991-1873073,187... 29 5.7
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 5.7
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 29 7.5
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 9.9
>11_06_0149 - 20636801-20637044,20637859-20639180
Length = 521
Score = 34.3 bits (75), Expect = 0.20
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 753 KYCLMSVKGCYTDFHIDFGGTSVWYHILRGAKVFGLIPP 869
++ ++ G + FH+D TS W +++GAK + + PP
Sbjct: 326 RWVIIGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPP 364
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 LTVTYLQKNGFTTPLLFKEKTGL-GLRVPTSNFTVNDVRMCVGSRRILDVMDVNTQKNIE 527
LT Y G T PL K T L +R+ ++FT D+ G RIL +DV+ K
Sbjct: 561 LTANYNNFTG-TLPLCLKNCTALYRVRLEENHFT-GDISEAFGVHRILQYLDVSGNKLTG 618
Query: 528 MTMKDW 545
DW
Sbjct: 619 ELSSDW 624
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 30.7 bits (66), Expect = 2.4
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +3
Query: 177 KKQVPRQLRERKHRKLYSDEWALGDDEAEGGRGFSLAD--KLESQRFEHTDAVLEMQGTD 350
K +VP LR R + + DDE E +G+ D KL++Q + LE+QG
Sbjct: 221 KYKVPDDLRLRYINHVEIKFRRMPDDEEEPPKGYISEDYNKLKAQALQD----LELQGFS 276
Query: 351 LTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNFTVNDV-RMCVGSRRILD 494
+TYL +G+ + +E+ +VP N V + + G+ RILD
Sbjct: 277 SVMTYLSTSGWVS----QEQHCNDYKVP-DNLRVKFITAVFKGNSRILD 320
>05_03_0561 -
15476484-15476649,15476814-15476893,15476971-15477030,
15477117-15477210,15477287-15477421,15477601-15477656,
15478359-15478460,15478544-15478651,15479206-15479283,
15479432-15479521,15480061-15480123
Length = 343
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 740 VHHVIECVCR-FSLLILQMSRPDGIDPIYQAYNTRSLHVVLEASVRKL 600
V H E V + F L Q S+PD +D +++ Y T +L L KL
Sbjct: 284 VEHAYEFVKKKFEELYFQSSKPDRVDRVFKIYRTTALDQKLVKKTFKL 331
>12_01_0240 +
1801797-1802014,1802314-1802411,1802556-1802638,
1802730-1802856,1803168-1803231,1803347-1803444,
1803526-1803610,1803723-1803846,1804153-1804254,
1804869-1804933,1805435-1805516,1805981-1806064
Length = 409
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 666 PNLSGVQYAELARSSRGECAKTPERLR 586
P +S V AEL ++R E A PERLR
Sbjct: 171 PGVSNVMAAELVHAARSENAGEPERLR 197
>11_01_0243 +
1872229-1872446,1872745-1872842,1872991-1873073,
1873163-1873289,1873623-1873686,1873802-1873899,
1873981-1874065,1874179-1874302,1874608-1874709,
1874821-1874934,1875325-1875389,1875891-1875972,
1876069-1876152
Length = 447
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 666 PNLSGVQYAELARSSRGECAKTPERLR 586
P +S V AEL ++R E A PERLR
Sbjct: 171 PGVSNVMAAELVHAARSENAGEPERLR 197
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.5 bits (63), Expect = 5.7
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Frame = +3
Query: 588 VISLEFSHTRLENYVQAPRIVRLIDW--VDTVWPRHLKDQQ-TESTNALDDMMYPKVXKY 758
++SL E Q P ++R+ + D R L+DQ ++ N + + P+ Y
Sbjct: 898 LVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPPEAHVY 957
Query: 759 CLMSVKGCYT----DFHIDFGGTS-----VWYHILRGAKVFGLIPPTEKNLXXYXKWVLS 911
C + +G T + G +W+ LR +V GL P T++ + W LS
Sbjct: 958 CYVHPQGSLTISVRKLAVKLPGEHDGKIWMWHRCLRCPRVIGLPPATKRVVMSDAAWGLS 1017
>02_05_1142 - 34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +3
Query: 186 VPRQLRERKHRKLYSDEWALGDDEAE-----GGRGFSLADKLESQRFEHTDAVLEM--QG 344
VP+ L++ R++ + EW G++ + G +A+ E Q+ E T +L++ +G
Sbjct: 803 VPKVLKQLTRRRVLTMEWVSGENPTDLLSLSKGISSEIAESSEKQKIEATARLLDLVNKG 862
Query: 345 TDLTVTYLQKNG 380
+ ++ L + G
Sbjct: 863 VEASLVQLLETG 874
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.7 bits (61), Expect = 9.9
Identities = 15/74 (20%), Positives = 34/74 (45%)
Frame = +3
Query: 660 DWVDTVWPRHLKDQQTESTNALDDMMYPKVXKYCLMSVKGCYTDFHIDFGGTSVWYHILR 839
DW++ H + ++ N +++ ++ M KG +T H D + W +
Sbjct: 149 DWLNMYLDSHPIHRDSDIANHTNEINCADY-RFVYMGPKGTWTPLHADVFRSYSWSANVC 207
Query: 840 GAKVFGLIPPTEKN 881
G K++ +PP++ +
Sbjct: 208 GRKLWLFLPPSQSH 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,631,928
Number of Sequences: 37544
Number of extensions: 539178
Number of successful extensions: 1484
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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