Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N17
         (1226 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    30   0.16 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    25   3.4  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    25   6.0  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    25   6.0  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 18/86 (20%), Positives = 43/86 (50%)
 Frame = +3

Query: 480  RRILDVMDVNTQKNIEMTMKDWQRYYDDPNKERLLNVISLEFSHTRLENYVQAPRIVRLI 659
            + ++  + V  Q  ++ ++ D  R  +  NKE   + +SLE +  +LEN +      R  
Sbjct: 783  QELMSQLSVQDQHEVD-SLNDEIRRLNQENKEAFTSRMSLEVTKNKLENLLTNNLFRRKD 841

Query: 660  DWVDTVWPRHLKDQQTESTNALDDMM 737
            + V  +    ++D++ + TN  ++++
Sbjct: 842  ELVQALQEISVEDRKRQLTNCRNEVV 867


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +3

Query: 267 GRGFSLADKLESQRFEHTDAVLEMQGTDLTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNF 446
           GR   + +K  +  F   +A   M  +DL V  L + G + P   K+  G G  + +S F
Sbjct: 512 GRTGRVGNKGRATSFYDPEADRAM-ASDL-VKILTQAGQSVPDFLKDAGGSGSYMGSSQF 569

Query: 447 TVNDVRMCVGSR 482
              D+R   GSR
Sbjct: 570 GGKDIRDSYGSR 581


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 467 VRRFAPYSRRNGCQHTEKHRDDHEGL 544
           V+RF  YS  N   + E HRD   GL
Sbjct: 177 VKRFPGYSAENKSFNAEMHRDHIFGL 202


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 513 QKNIEMTMKDWQRYYDDPNKERLLNVISL 599
           Q+N++M   D+++ YD      LL V+ L
Sbjct: 597 QRNLDMAYIDYKKAYDSVPHSYLLKVLQL 625


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,602
Number of Sequences: 2352
Number of extensions: 21768
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 139791474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)