Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N17
         (1226 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.5  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 289 ISWRVKDSSTPTQSWRCRAPI-SLSHTCRRMVLQ 387
           I  R KDSS+  + W  RA I  L+   R + LQ
Sbjct: 332 IRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQ 365


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -1

Query: 599  QRDYVQETLLVRIVIVTLPILHGHLDVFLCVDIHYVENTARTDAHAHIVHGEIT 438
            ++ YVQ+ +      +   +++     ++C D    E+  +T  H    HGE+T
Sbjct: 1043 KKTYVQDLIQAEASQIYDMLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMT 1096


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 121 NLHYFT*IFYSXTREGSNAIHHLHTPTTGIXRIP 20
           ++H+F   F + + +   ++H LH     + RIP
Sbjct: 75  DVHHFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,205
Number of Sequences: 438
Number of extensions: 5801
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)