Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N16
         (1183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   354   2e-98
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   353   2e-98
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   1.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   6.7  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   8.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
            L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  354 bits (870), Expect = 2e-98
 Identities = 169/314 (53%), Positives = 217/314 (69%)
 Frame = +3

Query: 81   FXHPVMGLWDSIPKRGPXXXXXXXXXXXKTTLANLXHLTAFIGYKAGMTHVVREPDRPGS 260
            F  P  G    +P++             K   +   HLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6    FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 261  KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 440
            K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66   KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 441  XXXXXXXXXXRWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 620
                      ++ +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126  KKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 621  NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH 800
            NGG++ DKV+WAREH EK + + S F Q+EMID I            +RW TK+LPRKTH
Sbjct: 184  NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243

Query: 801  KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 980
            +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST
Sbjct: 244  RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NAST 296

Query: 981  EYDLSEKSITPMXG 1022
            ++D +EK ITPM G
Sbjct: 297  DFDATEKRITPMGG 310



 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 31/46 (67%), Positives = 34/46 (73%)
 Frame = +2

Query: 65  MSHRKFSXPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXSFDCF 202
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKP     F
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAF 46


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  353 bits (869), Expect = 2e-98
 Identities = 168/314 (53%), Positives = 217/314 (69%)
 Frame = +3

Query: 81   FXHPVMGLWDSIPKRGPXXXXXXXXXXXKTTLANLXHLTAFIGYKAGMTHVVREPDRPGS 260
            F  P  G    +P++             K   +   HLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6    FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 261  KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 440
            K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66   KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 441  XXXXXXXXXXRWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 620
                      ++ +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126  KKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 621  NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH 800
            NGG++ DKV+WAREH EK + + S F Q+EMID I            +RW TK+LPRKTH
Sbjct: 184  NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243

Query: 801  KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 980
            +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST
Sbjct: 244  RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NAST 296

Query: 981  EYDLSEKSITPMXG 1022
            ++D +EK ITPM G
Sbjct: 297  DFDATEKRITPMGG 310



 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 31/46 (67%), Positives = 34/46 (73%)
 Frame = +2

Query: 65  MSHRKFSXPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXSFDCF 202
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKP     F
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAF 46


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 959 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 861
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 992 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 870
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 497  FASKLILPSLTGFSESLLLAFVPVFVEATST 405
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 534 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 644
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,452,295
Number of Sequences: 5004
Number of extensions: 91620
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)